Pairwise Alignments

Query, 399 a.a., prophage LambdaSo, site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 432 a.a., hypothetical protein from Pseudomonas sp. RS175

 Score =  267 bits (683), Expect = 4e-76
 Identities = 149/384 (38%), Positives = 221/384 (57%), Gaps = 11/384 (2%)

Query: 6   IALSDAAIKRAVADESITEIRDPRYP-LRLRLGSSRSRGSWYLVTNKDGKASWAKVANWP 64
           +  SDA I+R  AD ++ ++RDPR+P L LR G  R RGSWYLV  K     W ++A +P
Sbjct: 7   VKFSDAEIRRQAADPAVHDLRDPRHPGLYLRFGQDRQRGSWYLVKGK----VWKQIARFP 62

Query: 65  LVSAKAIIDDLPTLS--IQHRQDQSVKVNTWLSCGGLLNWYLTRSQADTSLSIKRRRNIK 122
            + A A++ +LP L   + H    +  +    + G LL+WY  R   D SLS KR+   K
Sbjct: 63  ELGASAVLAELPALRQRLLHDPSATAALGGLSTVGQLLDWYGDRMARDRSLSAKRKNGAK 122

Query: 123 CTIVKHLLPVLGEVMLSELNHHKVDELLIWPLQARYSIGSVRQYYAVLRKAFKQATVLKL 182
             I  HL P L  + + E++   +D+LL+WP Q   S+  VRQ + +L  AF+QA  L L
Sbjct: 123 SAIACHLRPRLASLPIREVSAPVLDKLLMWPAQEVLSLSYVRQLFGLLVVAFRQAHKLGL 182

Query: 183 ISDDPLASLSFTDFIATPIATKPPQLQATDLPKLLSDLDTASD---SAALLVFIMLAYGT 239
           I  +P+A L F DF    I  K  +L+   L  L+  L    +   + A+L  +ML +GT
Sbjct: 183 IESNPVAGLKFVDFTKAKIMPKAARLRGVHLVDLVPALVARFEEQPAEAMLALMMLCHGT 242

Query: 240 RIGETRLLKWSYYDEPNAKLVIPANITKTQAQLTIPISGLMADILRWHKSMQAAAGYRGG 299
           R+GETRL +WS     + +  IPA  TKT+ +  +P++     +L  ++++Q A GY G 
Sbjct: 243 RVGETRLARWSDISLADGEWFIPAEHTKTRTEHRLPLTAQAKALLTRYRAVQIATGYEGI 302

Query: 300 YLFPHPCRNTGLDERGANSLVKQVSGGEWTAHDLRKLARSCWADLGIDYMVAEQMLNHSM 359
           YLFP   R   L E  A+++  ++  GEWT+HDLRK+AR+ W DLGID  + E +LNHS+
Sbjct: 303 YLFPSR-RGRSLSEGQASAVFTRLGQGEWTSHDLRKVARTAWTDLGIDGHIGEMLLNHSL 361

Query: 360 TKLDQAYIHTYLADQKREAIELWH 383
            K+   YI+T   +Q+ +A+E WH
Sbjct: 362 GKIASTYINTQAREQRLKALEKWH 385