Pairwise Alignments

Query, 399 a.a., prophage LambdaSo, site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 407 a.a., integrase from Escherichia coli ECRC62

 Score = 59.7 bits (143), Expect = 1e-13
 Identities = 61/291 (20%), Positives = 123/291 (42%), Gaps = 26/291 (8%)

Query: 103 YLTRSQADTSLSIKRRRNIKCTIVKHLLPVLGEVMLSELN-HHKV---DEL-LIWPLQAR 157
           Y  R ++D +L       ++  + KH+ P LG   ++     H V   DE+    P+ A 
Sbjct: 118 YARRKRSDEAL-------VRAQLRKHIYPRLGRYPITRCETRHWVACFDEINQTKPMTAG 170

Query: 158 YSIGSVRQYYAVLRKAFKQATVLKLISDDPLASLSFTDFIATPIATKPPQLQATDLPKL- 216
                  + + + ++A +   V +  + D LA L+  D +  P   +   L  ++L  + 
Sbjct: 171 -------RMFQISKQALRFCKVRRYAASDALAFLTIQD-VGQPSGQRDRVLSDSELADVW 222

Query: 217 -LSDLDTASDSAALLVFIMLAYGTRIGETRLLKWSYYDEPNAKLVIPANITKTQAQLTIP 275
             +D D      + L+ +++ +G R  E RL +WS +D  +    +P   +KT+ ++   
Sbjct: 223 RCTDSDDQQPYYSRLLKMLVLFGARTMEVRLSRWSEWDFTSWIWTVPKEHSKTREKI--- 279

Query: 276 ISGLMADILRWHKSMQAAAGYRGGYLFPHPCRNTGLDERGANSLVKQVSGGEWTAHDLRK 335
           +  +   I  W + ++   G + G L         +  +G            WT HDLR+
Sbjct: 280 VRSIPEAIRPWLEELKRETG-KTGLLLGEDRTRQAVSLKGRRLFKDFHHNEPWTLHDLRR 338

Query: 336 LARSCWADLGIDYMVAEQMLNHSMTKLDQAYIHTYLADQKREAIELWHKHL 386
              +   ++GI   + E +L H++  +   Y  +    +K +A+  W+  L
Sbjct: 339 TFSTGLNNMGIAPHIVELLLGHALPGVMAIYNRSLYLPEKLDALNKWYDRL 389