Pairwise Alignments

Query, 581 a.a., hypothetical phage terminase large subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 568 a.a., terminase TerL endonuclease subunit from Variovorax sp. OAS795

 Score =  189 bits (479), Expect = 3e-52
 Identities = 163/567 (28%), Positives = 251/567 (44%), Gaps = 30/567 (5%)

Query: 7   TTSTSSSADIEDRVTRWAKQVASGEFLAGPDIRNACKRHLKDLETGHERGLTWDLAAANR 66
           T S+S  AD   +   +A+ V +G   AG  +R A KRHL DL+    +   +   A   
Sbjct: 5   TKSSSPPADHAGKAQWYAESVLNGTVPAGHWVRQAAKRHLDDLKKSKAKAYPFKFEADKG 64

Query: 67  A-ISFFPKVLRLSGGDHEGKP--FNLLDWQAFIVGSLFGW-KDADGTRRFRMCYVESGKG 122
           A +  F + L  + G    K     L  WQ F+V   FGW +  +G RRFR  Y E  + 
Sbjct: 65  AKVCRFIEKLPHTKGKWAAKKEVIRLQPWQCFLVVVGFGWLRKKNGKRRFRTFYWEIPRK 124

Query: 123 SGKSPLAAGIGLYGLVADGEASAEIYAAATKKDQAMVLFRDAVSMVNQSPQLSSRLKKSG 182
           +GKS LA GIG Y   ADGE  AE+Y+ AT + QA  +F  A  M+ ++  L+S +   G
Sbjct: 125 NGKSLLAGGIGNYMFTADGEFGAEVYSGATTEKQAWEVFGPARLMMKRNEGLASHM---G 181

Query: 183 TGQSVWNLAYLAKNSFFRPISSDNGQSGPRPHMALIDEVHEHKNNNVVEMMRAGTKGRKQ 242
                  +  L+  S F P+  + G  G  P  A++DE HEH    + + M  G   R+Q
Sbjct: 182 VEVMAKGMVVLSNGSKFEPVIGNPGD-GASPSCAIVDEYHEHDTPTLYDTMETGMGAREQ 240

Query: 243 ALIFMITNSGHDRTSVCYSYHEYGKAICAGTKEDDSFFAFICSLDEGDDPINDESCWQKA 302
            LI  IT +G +    C+  H+    +  G +EDD  F  I  +D+ DD  + +S   KA
Sbjct: 241 PLILAITTAGANIAGPCHEKHDEVCKVLDGIQEDDELFGVIFGIDKEDDWADPKSL-IKA 299

Query: 303 NPSLGHTFTHKYLREQVTQAKGMPAKESIVRRLNFCQWVDSASPWLSADTWMDCEDD-FD 361
           NP+ G +    +L  Q  +A   P +++  +  +   W    +  ++   W  C D   D
Sbjct: 300 NPNYGVSVDADFLLAQQRRALQNPLQQNKFKTKHLNVWTSVFAGVMNMQQWALCADPLLD 359

Query: 362 ISELYGEECYGGLDLSGTRDLTALALYFPRVK------TLLVDLWTPKDTLLDRERTDNV 415
             EL G + +  +DL+   DL A    + R         L    W P++  ++    +  
Sbjct: 360 EEELKGCDSWVAVDLASKSDLCAEQRLYRRDSHGKAHYYLFGSYWLPEEA-VEEPGPNAA 418

Query: 416 PYSAWLRQGFIHAPPGHAVDYSFVAERIAELSALFEIKSIGFDQYRIHYLEPELAEANVF 475
            Y+ W++QG +    G  VD+  + E++ E       +   FD +    +   L   N  
Sbjct: 419 HYAKWVKQGLLIQTDGATVDFEQITEQVIEDCKRINPREAIFDPFNAVQMMQALMAKN-- 476

Query: 476 IPLVKHGQGYYKASESNLWMPRSIELFEKLITSKEIRI--KTNPCLRWNAASAVLEADAK 533
           I  V+  Q     + +N  +P    L E L   K+ R     N    W  ++ V     K
Sbjct: 477 IEAVEFIQ-----TPANFAVP----LDELLTAVKDGRFHHDGNAMTTWCMSNMVARPAKK 527

Query: 534 DNRIFTKKKSTGRIDGVVAAAMAVGTA 560
                 K+K   +IDG VAA MA+  A
Sbjct: 528 GLVSPIKQKPHQKIDGAVAAIMAMARA 554