Pairwise Alignments

Query, 581 a.a., hypothetical phage terminase large subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 561 a.a., putative Phage terminase, large subunit from Pseudomonas putida KT2440

 Score =  219 bits (558), Expect = 2e-61
 Identities = 159/568 (27%), Positives = 268/568 (47%), Gaps = 31/568 (5%)

Query: 22  RWAKQVASGEFLAGPDIRNACKRHLKDLETGHERGLTW--DLAAANRAISFFPKVLRLSG 79
           ++AK V +G+ L    I    +RHL DL     +   +  D A A +   F  ++L  + 
Sbjct: 6   KYAKDVVAGKILVCKWIMLLAQRHLDDLAVSKRKDFPYKFDPAKAEKVAKFL-QLLPHTK 64

Query: 80  GDHEGKP--FNLLDWQAFIVGSLFGW-KDADGTRRFRMCYVESGKGSGKSPLAAGIGLYG 136
           G   GK     L  WQ F V   FGW +  DGTRR+R   V   + +GKS +  G+GLY 
Sbjct: 65  GKWGGKKQLIKLEPWQLFSVCVPFGWVRKKDGTRRYRTILVFVPRKNGKSIIGGGVGLYM 124

Query: 137 LVADGEASAEIYAAATKKDQAMVLFRDAVSMVNQSPQLSSRLKKSGTGQSVWNLAYLAKN 196
            VADGE  AE+Y+ AT + QA  +FR A  MV ++  L       G   +  N+  LA  
Sbjct: 125 FVADGEFGAEVYSGATTEKQAWEVFRPAKLMVERTDDLREHY---GVDVNASNMVVLADG 181

Query: 197 SFFRPISSDNGQSGPRPHMALIDEVHEHKNNNVVEMMRAGTKGRKQALIFMITNSGHDRT 256
           S F P+    G  G  P  +++DE HEH+++ + + M  G   R+Q ++ +IT +G    
Sbjct: 182 SRFEPVIGKPG-DGSSPSCSVVDEYHEHQDSTLYDTMETGMGAREQPIMLVITTAGSSIG 240

Query: 257 SVCYSYHEYGKAICAGTKEDDSFFAFICSLDEGDDPINDESCWQKANPSLGHTFTHKYLR 316
             C+      + +  G  +    +  + ++D+GDD    E   +KANP+ G +    +L 
Sbjct: 241 GPCHQLIRDSERMLEGVIDRPDLWPALYTIDQGDD-WTSEIALRKANPNFGISVAEDFLL 299

Query: 317 EQVTQAKGMPAKESIVRRLNFCQWVDSASPWLSADTWMDCEDDFDISELYGEECYGGLDL 376
            +   A     K++  R  +  +WV + + WL+   W +      ++EL G  CYG LDL
Sbjct: 300 ARQRDAMQSATKQATFRTKHLNEWVGAKNAWLNMLRWKEAPVRKSLAELEGRSCYGSLDL 359

Query: 377 SGTRDLTALALYFP-----RVKTLLVDLWTPKDTLLDRERTDNVPYSAWLRQGFIHAPPG 431
           +   D+ A  L FP         +    + P+  +L+   ++   Y  +   G +    G
Sbjct: 360 ASKIDIAANLLIFPPHGDDPFWHIHARYYLPEARVLEELDSNTARYREFDALGLLTLTDG 419

Query: 432 HAVDYSFVAERIAELSALFEIKSIGFDQYRIHYLEPEL-AEANVFIPLVKHGQGYYKASE 490
              D+  + E + E +  F+I++  +D ++   L  E+ AE    +P+V+  Q     SE
Sbjct: 420 EVTDFEVIKEDMREFAGRFDIRAYAYDPWQATQLAQEMDAEG---LPMVELRQTVQNLSE 476

Query: 491 SNLWMPRSIELFEKLITSKEIRIKTNPCLRWNAASAVLEADAKDNRIFTKKKSTGRIDGV 550
                   ++  E L+  +++     P L W A++ V + D KDN    K++   +IDG+
Sbjct: 477 -------PMKEVEALVLQRKLAHGDCPVLTWMASNVVAKLDVKDNIYPNKERPENKIDGM 529

Query: 551 VAAAMAVGTALESDGVDDT---EDWLAA 575
           V+       A++  G+DD+   +D+LA+
Sbjct: 530 VSLITGCAVAIKL-GIDDSGHFDDFLAS 556