Pairwise Alignments

Query, 581 a.a., hypothetical phage terminase large subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 553 a.a., terminase large subunit from Escherichia coli ECRC98

 Score = 48.1 bits (113), Expect = 9e-10
 Identities = 107/524 (20%), Positives = 198/524 (37%), Gaps = 51/524 (9%)

Query: 64  ANRAISFFPKVLRLSGGDHEGKPF---NLLDWQAFIVGSLFGWKDAD-GTRRFRMCYVES 119
           A  A++ F K LR+   D  G P    +   W   +V +LFG  DA  G R  +  ++  
Sbjct: 32  AAHALAIF-KQLRIV--DAPGSPTFGESCAQWVFDLVAALFGSYDAQTGVRHIKEVFILI 88

Query: 120 GKGSGKSPLAAGIGLYGLVADGEASAEIYAAATKKDQAMVLFRDAVSMVNQSPQLSSRLK 179
            K + KS LAAGI +  L+ +   +A     A   + A   F  A  MV +   L    +
Sbjct: 89  PKKNSKSTLAAGIMMTALLLNWRQAAGYTILAPTVEVAANAFNPARDMVRRDDDLDDLCQ 148

Query: 180 KSGTGQSVWNLAYLAKNSFFRPISSD-NGQSGPRPHMALIDEV----HEHKNNNVVEMMR 234
                  +  + +   ++  + +++D N  SG +    LIDE+     ++K  +++    
Sbjct: 149 ---VQTHIRTITHRVTDTTLKVVAADPNTVSGIKSVGTLIDELWLFGKQYKAEDMLREAI 205

Query: 235 AGTKGRKQA-LIFMITNSGHDRTSVCYSYHEYGKAICAGTKEDDSFFAFICS-----LDE 288
            G   R +  +++  T S      V     +Y + +  G   D  F   I       ++ 
Sbjct: 206 GGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDVRDGKIHDPHFLPVIFEHPPEMVES 265

Query: 289 GDDPINDESCWQKANPSLGHTFTHKYLREQVTQA--------KGMPAKESIVRRLNFCQW 340
           G   + +       NP+LG++    +L  +  +A        +G  +K + V        
Sbjct: 266 GAHLLMENLA--MVNPNLGYSVDEAFLYREYRKAREAGEEAFRGFMSKHANVE----IGL 319

Query: 341 VDSASPWLSADTWMDCEDDFDISELY--GEECYGGLDLSGTRDLTALALYFPRVKTLLVD 398
              +  W  AD W        + ++    +    G+D  G  DL  + +     +T    
Sbjct: 320 ALRSDRWAGADFWEQQGRRVSLDDILQRADVVTVGIDGGGLDDLLGMYVIGRDRETREWL 379

Query: 399 LW---TPKDTLLDRERTDNVPYSAWLRQGFIHAPPGHAVDYSFVAERIAELSALFEIKSI 455
            W      +T + R +++   +   +  G +        D + VAE +  +     +  I
Sbjct: 380 GWGHAWAHETAVVRRKSEASRFQDLVACGDMTIVRRVGDDTAEVAEYVRRIHEAELLDHI 439

Query: 456 GFDQYRIHYLEPELAEANVFIPLVKHGQGYYKASESNLWMPRSIELFEKLITSKEIRIKT 515
           G D   +  +   LAEA +         G          +  +I+  E+ +    +    
Sbjct: 440 GIDPSGVGQILDSLAEAGI-------PDGIVVGISQGWKLGGAIKTTERKLAEGVLVHGD 492

Query: 516 NPCLRWNAASAVLEADAKDNRIFTKKKSTGR--IDGVVAAAMAV 557
            P + W   +A +E   K N I   K+++GR  ID ++A   AV
Sbjct: 493 QPLMAWCVGNARVE--PKGNAILITKQASGRGKIDPLMALFNAV 534