Pairwise Alignments

Query, 581 a.a., hypothetical phage terminase large subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 381 a.a., Phage terminase large subunit from Escherichia coli ECRC62

 Score =  143 bits (360), Expect = 1e-38
 Identities = 85/281 (30%), Positives = 146/281 (51%), Gaps = 16/281 (5%)

Query: 283 ICSLDEGDDPINDESCWQKANPSLGHTFTHKYLREQVTQAKGMPAK--ESIVRRLNFCQW 340
           I  LD+ +  ++D + W KANP++  +   + L   + +A+G+P++  E + +R N   W
Sbjct: 87  IYELDD-ESEVDDPAMWIKANPNIDVSVDREKLASTIQKARGIPSQWVEMLTKRFNI--W 143

Query: 341 VDSASPWLSADTWMDCEDDFDISELYGEECYGGLDLSGTRDLTALALYFPRVKTLLV--D 398
              A+PW+    W +C   F  ++LYG+ECY GLDLS T D++++   FP  K +++   
Sbjct: 144 CQGATPWMGNGAWAECAGTFAEADLYGQECYAGLDLSSTSDISSVCYAFPVGKKIMLVSR 203

Query: 399 LWTPKDTLLDRERTDNVPYSAWLRQGFIHAPPGHAVDYSFVAERIAELSALFEIKSIGFD 458
            + P+  L +    +   Y  W++ G+I   PG  +DY  + + I   +  F I+ +GFD
Sbjct: 204 HYLPEFQLQNPANKNRAIYRQWVKAGWIRTTPGDCIDYDRIRDDIMADAENFNIRLVGFD 263

Query: 459 QYRIHYLEPELAEANVFIPLVKHGQGYYKASESNLWMPRSIELFEKLITSKEIRIKTNPC 518
            +   +L  +L  A     +    Q Y + S        + + FE  +  K I  + +P 
Sbjct: 264 TWNATHLRTQLQGAG--FEVEPFPQTYLRFSP-------AAKSFEVFVNRKVIVHRGDPV 314

Query: 519 LRWNAASAVLEADAKDNRIFTKKKSTGRIDGVVAAAMAVGT 559
           L W+ ++ V+++DA  N    KKKS+ +ID  VAA MA GT
Sbjct: 315 LAWSMSNVVMQSDANANIKPNKKKSSNKIDPSVAALMAFGT 355