Pairwise Alignments

Query, 85 a.a., conserved domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 245 a.a., Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif from Escherichia coli ECRC99

 Score = 62.0 bits (149), Expect = 3e-15
 Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 5   QELYLDKFAKAGFVVLPNINLADLQIGDGILMQIQSQRVNHAAVYVGEGKILHHLYGRLS 64
           Q LYLD  A  GF  +P   L+  Q GD +L    +   NHAA+Y G G++LHHL  +LS
Sbjct: 148 QNLYLDNMAVTGFYRVP---LSSAQAGDILLCCFGASVANHAAIYCGNGELLHHLPEQLS 204

Query: 65  RHDIYGGYWQRNTRLIVRY 83
           + + Y   WQR T    R+
Sbjct: 205 KRERYSEKWQRRTHSAWRH 223