Pairwise Alignments

Query, 353 a.a., transcriptional regulator, AraC family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 356 a.a., transcriptional regulator, ornithine utilization from Pseudomonas putida KT2440

 Score = 86.7 bits (213), Expect = 9e-22
 Identities = 80/303 (26%), Positives = 133/303 (43%), Gaps = 24/303 (7%)

Query: 47  GIGRAELTHCQFVYVWQVEYAMEFLRLQGGDPDIGTKLGLSYRVNSLDVLLPHLAELTSL 106
           GIG A+L H       Q E  +          DIG +LG   RV+   +L   L    +L
Sbjct: 60  GIGPADLGHADARITTQQELQV-CANAVARREDIGLELGQRMRVSCYGMLGYALLSSATL 118

Query: 107 QACLQFVINHPSLVGSFTDSLIRLEDESVCIRWLNTGRIDKEQYG-FQFLHSIGSLLGLA 165
              L+  + +P+L+G  T   +RL D+   + +  +   D      F     + SL  + 
Sbjct: 119 GDALRLALQYPALLG--TVFKLRLLDDGQRVWFSASDYQDSPALSAFNAEFCLVSLKVIC 176

Query: 166 RELTGAEIRLTQINLAEPVRDG--SFLSVATGAKVQFNCEYYEWSISLNYLALDINYPFP 223
            +L G  + L       P R G  +  + A    + F  E   ++    +L +    P P
Sbjct: 177 DDLLGRPLPLLGARFEHP-RPGYHALYAGAFQCPIGFAAEDNAFAFERRWLDM----PLP 231

Query: 224 EGTEIT-------------SLVSTTSLIETVLKAIRAQFPDVPHLDEMAAQLHMSDRSFR 270
               IT                   + +  + + +  Q    P L+ +A Q++ S R+ R
Sbjct: 232 LADPITHKAMSERCRRLNLEFTGRQAWLGRIRQLLAQQLDAAPGLEGLARQMNCSSRTLR 291

Query: 271 RRLAQLGSSYQRLVDQVRCQRAVELILANELDIEAIAESLGYSDVSHFRQSFKHWIGHPP 330
           R L  LGSSYQ+L+D++R +RA +L+   ++ I  IAE+LG+S+ + FR +F+ W G  P
Sbjct: 292 RHLQALGSSYQQLLDELRFERAKQLLADEQMPIYRIAETLGFSETASFRHAFQRWSGVAP 351

Query: 331 GYF 333
            +F
Sbjct: 352 SHF 354