Pairwise Alignments

Query, 884 a.a., TonB-dependent receptor domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 872 a.a., TonB-dependent receptor from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  206 bits (524), Expect = 5e-57
 Identities = 239/936 (25%), Positives = 386/936 (41%), Gaps = 130/936 (13%)

Query: 12  RFALIGGATTAALSTMSVFAAEDDNAKVERIEVTGSRIQRTDMESALPVTVLSAEDIAKT 71
           R  L+  A+ A L+T +   A++ + +V+ + VTGSRI     E   PV  ++ E IA  
Sbjct: 4   RKILMATASLAWLATAAAAQAQEAS-RVDDVVVTGSRI--AGGERIAPVETVARETIAAA 60

Query: 72  GLSDVSAVLAQMPFNTAGSFISDAGSS--ASNHASSGMRGLGSNRTLTLINGRRIAPSAT 129
           G++D S ++  +  N+      D  +   +S  A   +R LG   TL L++G+R   SA 
Sbjct: 61  GIADASQLVRLVTANSGSEAQVDQLNQPQSSGTAQFNLRNLGLGSTLVLVDGQRWTNSAV 120

Query: 130 FGGDATNL----NLIPMDAIERIEILRDGASAIYGSDAIGGVINIILKKTFDGLAFDAKF 185
              D +      +L+PM A++R+E+++DGASA+YGSDA+ GV+N I ++  +     AK+
Sbjct: 121 VATDGSGFVDINSLVPMIALQRVEVVKDGASAVYGSDAVAGVVNFITRRGVERPEVSAKY 180

Query: 186 GNPTQGGRDEKSASVTFGNTSDKSSSLVII-EHKQFDPLEGGQRPHLTANWDEKYGRSAL 244
                    E+S     G        L +   H     L   +R    A   E+YGR+A 
Sbjct: 181 A---VADGSEESVIEAIGEVRLLGGELTLAASHFHRSALGSDERDFTQA---ERYGRAAW 234

Query: 245 YAPEGTYRPVASRPIKGADGTFSDPVYTGLQVPGKDC--PADRIV--TSKAGSACGFNHF 300
            A     +P          G++  P   G   P   C  PA R     S   + C  ++ 
Sbjct: 235 TAVTSYGQP----------GSYFRPSRNGFS-PDPACGNPAFRSAYRNSPTDAFCRLDYS 283

Query: 301 DGTDYLPDQTKDSVFSNMTYRITD-----ELEWFGQAIVMRDKSITSSTALWTPNLYIAA 355
           D  D +P++T+  +F++    + D     +  W     + R    + S  +   +L + A
Sbjct: 284 DFFDLVPEETRTQLFADYRRPVGDMTLSLQGAWSATNTIARQ---SPSLPILARSLTVPA 340

Query: 356 DNPLNPTFGTANASEVQAYHRLKGVADRTTEFDSNVVDVVTGLNLELDAGSLSWYVQYSD 415
            +P NP FG A     +      G +    EFD     V  GL+     G  +W +  + 
Sbjct: 341 SHPDNP-FGEAVLFRGRLLGAEAGASQ--AEFDYRTWRVAAGLDGRFGNG-WTWNLSATS 396

Query: 416 QIVNIETDSYVFEDKLQEAVDKGL----------------------YNPFVEG----GNA 449
              ++  D     D +  A+   L                      +NPF       G A
Sbjct: 397 SRQHVAYDK---PDTIGSALQIALNGLGGAGCNPATGRPGVGSCQYFNPFGSAYLGTGTA 453

Query: 450 TQATLDTFLHTAT--------RKATSNTTGTGLSWAALAPISLPGGDLGYAVGMEYQKIE 501
             A L   L  +T          A ++T+G  L+WA        GG +  AVG +Y++  
Sbjct: 454 NSAALIDSLIGSTGLRGAATLTTADASTSGEALAWA--------GGSVDVAVGAQYRRSG 505

Query: 502 YK-DTRDAQQAAGNVLGTYGGDSAGDRSYKAAFVELELPVLDHLNVKLASRYDQYSLPDV 560
           ++ D  D       +      D  GD+   AAF E  L + D +  +LA RY+ Y   + 
Sbjct: 506 FRHDWSDLVNRGDLLTAGVSPDFEGDQEALAAFAEARLHLGDRIEAQLAGRYESYD-GNE 564

Query: 561 GQLSNSVNVRYEALDNLVLRASYGQGFRAPSLDDLLGEPATSYDYVTDTTLCQSLPADQQ 620
           G+ S  V +R++  D L LRAS+GQGFRAPS+    G  A             S P+   
Sbjct: 565 GRFSPKVAIRWDVTDALALRASWGQGFRAPSVYAQSGAQA-------------SQPSVFD 611

Query: 621 KGNPACEDTQYLRKSSGNKELEPEKSAQYSFGAVWNITENIDFVVDYYNIEITDQVSYID 680
           +G     +T     +SG  +L+PEKS   + GA+W   E ++  VD +  +  DQV    
Sbjct: 612 RGAFVFVNTL----TSGRADLKPEKSESLNLGALWTPIEGLELGVDAWRFDYADQVVKES 667

Query: 681 AQTIVDL----EAIGGLGAYDPNYIYVKRKADGTIDEIGAGNINMDGVQTSGLDVSFTSN 736
           AQ +++      A G  G    + I   R   G +  +    +N   ++T G+D+S    
Sbjct: 668 AQALINQAAADTAAGRTGTEAQSRI--TRSPSGALTFVQLYFVNASSIETQGIDLSARYR 725

Query: 737 FDLADLGTFKFAVEGTYALEYTEQASPIAKRYDVLGT-------KGYPPLRFNTTFSYAI 789
             L   G    +   TY   Y  +    A +   +G+       +  P  R      ++ 
Sbjct: 726 RGLWG-GEATASANWTYVDAYDIRLDASAAKVSGVGSTNLNNIGRSLPRNRGEFGLGWSG 784

Query: 790 DDFSTSLIAKYIDSYDGETPQQQEVGTNKQDFSSFTTWDLTFNYDFNSYGNVTVGARNLF 849
              + + +  Y D Y  +       G      +S TT DL ++    +  +++VG  N+ 
Sbjct: 785 GPNALTALVHYTDGYAND-----RSGITDASIASQTTVDLLYSRTIGADLDLSVGVVNVA 839

Query: 850 D-AMPAVNYSLGYPGYDTDTHNILGRVVFAGYKVKF 884
           D A P   ++LGY     D     GRVV  G   +F
Sbjct: 840 DKAPPLAQFALGYDPVAADPR---GRVVSIGLSKRF 872