Pairwise Alignments

Query, 533 a.a., Na+/H+ antiporter (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 523 a.a., sodium/proton antiporter NhaB from Serratia liquefaciens MT49

 Score =  675 bits (1741), Expect = 0.0
 Identities = 340/501 (67%), Positives = 410/501 (81%), Gaps = 4/501 (0%)

Query: 1   MPMTMSQAFIGNFLGNSPKWYKIAILSFLIINPILFFYVSPFVAGWVLVLEFIFTLAMAL 60
           M  T+  A + NFLG SP WYK+AIL FL++NP++FF V PF+AGW+LV+EFIFTLAMAL
Sbjct: 1   METTLRSALVKNFLGQSPDWYKLAILIFLLVNPLVFFLVDPFIAGWLLVIEFIFTLAMAL 60

Query: 61  KCYPLQPGGLLAIEAVAIGMTSASQVLHEIEANLEVLLLLVFMVAGIYFMKQLLLFAFTK 120
           KCYPL PGGLLAIEAV IGMTS  +V  EI  NLEVLLLL+FMVAGIYFMKQLLLF FTK
Sbjct: 61  KCYPLLPGGLLAIEAVLIGMTSPDRVGEEIAHNLEVLLLLIFMVAGIYFMKQLLLFVFTK 120

Query: 121 MITKVRSKILVSLLFCLASAFLSAFLDALTVIAVIITVAVGFYSIYHKVASGKDFSADHD 180
           ++  +RSKIL+SL FC A+AFLSAFLDALTV+AV+I+VA GFYSIYH V S     A   
Sbjct: 121 LLLNIRSKILLSLAFCFAAAFLSAFLDALTVVAVVISVATGFYSIYHNVVSNPSGGAAD- 179

Query: 181 HTSENKNEEGEDQLNEAELESFRGFLRNLLMHAGVGTALGGVCTMVGEPQNLIIAAQANW 240
             +++ N   +D  N+  LE FR FLR+LLMHAGVGTALGGV TMVGEPQNLIIA  A+W
Sbjct: 180 -VNDDSNLVSDD--NKQTLEQFRAFLRSLLMHAGVGTALGGVMTMVGEPQNLIIAKSADW 236

Query: 241 QFGEFAIRMSPVTVPVFIAGILTCYIVEKFRIFGYGAQLPDAVHKILCDYDAHEDARRTN 300
            F +F +RM+PVT+PV I G+L C ++E+F +FGYGA+LP+ V ++L ++D    A R+ 
Sbjct: 237 GFVDFFLRMAPVTLPVLICGLLVCLLLERFGVFGYGAKLPERVREVLTEFDRQATAGRSK 296

Query: 301 KDKMKLIVQAFIGVWLIAGLALHLASVGLIGLSVIILATAFNGITDEHALGKAFEEALPF 360
           ++++KL+VQA IGVWLI  LA HLA VGLIGLSVIILAT+  G+TDEHA+GKAF+EALPF
Sbjct: 297 QEQVKLVVQALIGVWLIVALAFHLAEVGLIGLSVIILATSLCGVTDEHAIGKAFQEALPF 356

Query: 361 TALLAVFFSVVAVIIDQQLFAPVIQWALNHEGNTQLVIFYIANGLLSMVSDNVFVGTVYI 420
           TALL VFF+VVAVII+Q LF PVIQ+ L  E ++QL +FY+ NGLLS VSDNVFVGTVYI
Sbjct: 357 TALLTVFFTVVAVIIEQHLFTPVIQFVLQAEPSSQLSLFYLFNGLLSSVSDNVFVGTVYI 416

Query: 421 NEVKAALLNGQITRDQFDLLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSYGR 480
           NE +AA  NG I+  QF++LAVAINTGTNLPSVATPNGQAAFLFLLTSALAPL+RLSYGR
Sbjct: 417 NEARAAFENGAISLKQFEMLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLVRLSYGR 476

Query: 481 MVWMALPYTIVLSIVGVMAIQ 501
           MVWMALPYT+VL++VG++ +Q
Sbjct: 477 MVWMALPYTVVLTLVGLLCVQ 497