Pairwise Alignments

Query, 533 a.a., Na+/H+ antiporter (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 513 a.a., NhaB sodium/proton transporter (Katherine Huang) from Escherichia coli BW25113

 Score =  677 bits (1747), Expect = 0.0
 Identities = 347/512 (67%), Positives = 415/512 (81%), Gaps = 8/512 (1%)

Query: 1   MPMTMSQAFIGNFLGNSPKWYKIAILSFLIINPILFFYVSPFVAGWVLVLEFIFTLAMAL 60
           M ++  +A   NFLG SP WYK+A++ FLI+NP++F  +SPFVAGW+LV EFIFTLAMAL
Sbjct: 1   MEISWGRALWRNFLGQSPDWYKLALIIFLIVNPLIFL-ISPFVAGWLLVAEFIFTLAMAL 59

Query: 61  KCYPLQPGGLLAIEAVAIGMTSASQVLHEIEANLEVLLLLVFMVAGIYFMKQLLLFAFTK 120
           KCYPL PGGLLAIEAV IGMTSA  V  E+ ANLEVLLLL+FMVAGIYFMKQLLLF FT+
Sbjct: 60  KCYPLLPGGLLAIEAVFIGMTSAEHVREEVAANLEVLLLLMFMVAGIYFMKQLLLFIFTR 119

Query: 121 MITKVRSKILVSLLFCLASAFLSAFLDALTVIAVIITVAVGFYSIYHKVASGKDFSADHD 180
           ++  +RSK+L+SL FC+A+AFLSAFLDALTV+AV+I+VAVGFY IYH+VAS +    D  
Sbjct: 120 LLLSIRSKMLLSLSFCVAAAFLSAFLDALTVVAVVISVAVGFYGIYHRVASSRTEDTDLQ 179

Query: 181 HTSENKNEEGEDQLNEAELESFRGFLRNLLMHAGVGTALGGVCTMVGEPQNLIIAAQANW 240
             S        D+  +  LE FRGFLR+L+MHAGVGTALGGV TMVGEPQNLIIA  A W
Sbjct: 180 DDSHI------DKHYKVVLEQFRGFLRSLMMHAGVGTALGGVMTMVGEPQNLIIAKAAGW 233

Query: 241 QFGEFAIRMSPVTVPVFIAGILTCYIVEKFRIFGYGAQLPDAVHKILCDYDAHEDARRTN 300
            FG+F +RMSPVTVPV I G+LTC +VEK R FGYG  LP+ V ++L  +D     +RT 
Sbjct: 234 HFGDFFLRMSPVTVPVLICGLLTCLLVEKLRWFGYGETLPEKVREVLQQFDDQSRHQRTR 293

Query: 301 KDKMKLIVQAFIGVWLIAGLALHLASVGLIGLSVIILATAFNGITDEHALGKAFEEALPF 360
           +DK++LIVQA IGVWL+  LALHLA VGLIGLSVIILAT+  G+TDEHA+GKAF E+LPF
Sbjct: 294 QDKIRLIVQAIIGVWLVTALALHLAEVGLIGLSVIILATSLTGVTDEHAIGKAFTESLPF 353

Query: 361 TALLAVFFSVVAVIIDQQLFAPVIQWALNHEGNTQLVIFYIANGLLSMVSDNVFVGTVYI 420
           TALL VFFSVVAVIIDQQLF+P+IQ+ L    + QL +FYI NGLLS +SDNVFVGT+YI
Sbjct: 354 TALLTVFFSVVAVIIDQQLFSPIIQFVLQASEHAQLSLFYIFNGLLSSISDNVFVGTIYI 413

Query: 421 NEVKAALLNGQITRDQFDLLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSYGR 480
           NE KAA+ +G IT  Q++LLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSYGR
Sbjct: 414 NEAKAAMESGAITLKQYELLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSYGR 473

Query: 481 MVWMALPYTIVLSIVGVMAIQIGFLEQMTQYF 512
           MVWMALPYT+VL++VG++ ++   L  +T++F
Sbjct: 474 MVWMALPYTLVLTLVGLLCVEF-TLAPVTEWF 504