Pairwise Alignments

Query, 412 a.a., uracil permease (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 442 a.a., pyrimidine permease from Escherichia coli BL21

 Score =  262 bits (670), Expect = 1e-74
 Identities = 157/405 (38%), Positives = 231/405 (57%), Gaps = 26/405 (6%)

Query: 8   LQGAQMLFVAFGALVLMPLLTGLDTSVALFTAGIGTLLFQLITKRQVPIFLASSFAFIAP 67
           + G Q     FGA VLMP+L GLD ++++  +GIGTLLF  IT  +VP +L SS AF+  
Sbjct: 34  IMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGV 93

Query: 68  ILYGVQTWG------IPSTMGGIMAAGVVYVCLGALVKVRGTDFIHKLLPPVVVGPVIII 121
           ++      G      I   +GGI+A G+VY  +G +V   GT +I +L+PPVV G V++ 
Sbjct: 94  VIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMA 153

Query: 122 IGLGLAPVAVNMALGKSGDGSLALVPTNTALIISLVSLCTTIAVAIFAKGLLKVMPILAG 181
           IGL LAP+AV      + D  +A++   T L I LV        A+F +G+++ + IL G
Sbjct: 154 IGLNLAPIAVKSVSASAFDSWMAVM---TVLCIGLV--------AVFTRGMIQRLLILVG 202

Query: 182 IIVG---YGLS---LAFG-IVDFSVVTAANWIAIPKFVAPEFNWHAIAFMIPVAIAPAVE 234
           +IV    YG+    L  G  VDF++V+ A W  +P F  P FN  A+  + PVA+    E
Sbjct: 203 LIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPAFNGQAMMLIAPVAVILVAE 262

Query: 235 HIGDILAISNVTGKDFMKKPGLHRTLTGDGVATIAAAAFGGPPNTTYSEVTGAVTLTRNF 294
           ++G + A++ +TG++    P + R   GDG+AT+ + + GG   TTY+E  G + +T+ +
Sbjct: 263 NLGHLKAVAGMTGRNM--DPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVY 320

Query: 295 DPRIMTWTAITAITLAFVGKLGALMQTIPVPVMGGIMCLLFGSIAAVGLNTLIRNHVDLS 354
              +    A+ A+ L F  K GAL+ TIP PV+GG   ++FG IA  G    ++N VDLS
Sbjct: 321 STLVFVAAAVIAMLLGFSPKFGALIHTIPAPVIGGASIVVFGLIAVAGARIWVQNRVDLS 380

Query: 355 EPRNLSIVGVTLVFGIGGMAFGIGSFSLTGISLCGIVAITMNLLL 399
           +  NL +V VTLV G G  A  +G F+L GI      AI +N LL
Sbjct: 381 QNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALL 425