Pairwise Alignments

Query, 360 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 341 a.a., hypothetical protein from Pseudomonas sp. S08-1

 Score = 91.7 bits (226), Expect = 3e-23
 Identities = 87/346 (25%), Positives = 153/346 (44%), Gaps = 32/346 (9%)

Query: 6   LKPSLVAFLYCLFTVNSLQAVEVSKLDEADVPVTSRAVPERNSALKTALEKVIIKNTGTA 65
           L   L+A    LF++ +L A  VS L +   PVTS+   ER +AL  ALE ++++ TG A
Sbjct: 3   LSARLLALCLPLFSLPAL-AETVSGLYQVREPVTSQQPEERTAALNRALETLVLRLTGDA 61

Query: 66  RSLDNSVIQSQLANPEALLSQFGYVEQNGQLLLKANFEHRRIVSLLRQAQLPVWGTQRPL 125
           +++ +  ++    +P+ L+SQ+ Y    G+ L+  +F+     + LRQA L +WG  RP 
Sbjct: 62  KAVQSPALEGVRQDPQQLVSQYVY---EGETLV-VDFDPVTTENKLRQAGLALWGANRPA 117

Query: 126 TLFWVAMPSEGDTILLSDSSSLAERKVFSTFSDERGIPVLLPILDLDELMGINPNDVKGM 185
            L W          L+ D    A        +  RG+P+ LP+ DL E +   P ++   
Sbjct: 118 ILAWWLNSGAEGASLIGDGQDAA--APLQQAAQHRGLPLRLPLADLQEQLVATPENLGAS 175

Query: 186 FADIVASVSGRYQADFLALMAIDPEGSRVRYRLNLYSKTTIDSLTPPLFTFNGSAENSAQ 245
             D +   S RY AD L  +    EGS+ +    L+     +          G A+ + Q
Sbjct: 176 QPDALQPASERYGADALLAVQAREEGSQWQAEWRLWLGDARE---------QGKAQGADQ 226

Query: 246 --AITAMMAALGDYYFTKYAIADSGEQVGASVTFVNIDKMAQVVEVEKYLKQLSAVKNAT 303
                A++ A+ +    ++ +        A    V    + +  E+E+ L+  +    A 
Sbjct: 227 KALADALLLAVSERLAPRFLVKPGA--ASALTLEVQGADLGRYAELERLLEPFA----AR 280

Query: 304 LSRIQGNTVTFTLDLFGSQTDFERLLSLEPRISVVAPGEFSASASP 349
           L RI+G+ + + ++    Q        L  ++ +    E  A A+P
Sbjct: 281 LVRIKGDQMVWQVNASAEQ--------LRAQLGLAGLQEVPADAAP 318