Pairwise Alignments

Query, 236 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 235 a.a., regulator of DnaA that prevents premature reinitiation of DNA replication from Pseudomonas putida KT2440

 Score =  182 bits (461), Expect = 6e-51
 Identities = 102/234 (43%), Positives = 146/234 (62%), Gaps = 3/234 (1%)

Query: 3   LNSPLQLSLPVYLPDDETFNSYYPAAGNDEL--IQKLRANAEGHGEAAIYVWGPVKSGRT 60
           +  P+QL L V L DD TF +YYP A    L  +++L     G  E+ IY+WG    GR+
Sbjct: 1   MKPPIQLPLGVRLRDDATFINYYPGANAAALGYVERLCEADAGWTESLIYLWGKQGVGRS 60

Query: 61  HLMHAACAHANELDRRSFYLPLGIHASISTALLEGLEQLDLICIDDVDDIAGHPVWEEAI 120
           HL+ AA     +    + YLPL         LL+ L Q +L+CIDD+  IAG   WEEA+
Sbjct: 61  HLLQAATHRFQQRGEPAVYLPLAQLLDRGVELLDYLAQYELVCIDDLHVIAGKADWEEAM 120

Query: 121 FDLYNRVAENKRCALVVSGRSAPADAGFLLPDLVSRMQWGLNYQLQPMADDEKLAALQRR 180
           F L+NR+ ++ R  L+++  ++P +    LPDL SR+   L +Q++ ++D++KL ALQ R
Sbjct: 121 FHLFNRLRDSGR-RLLLAASASPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 179

Query: 181 AAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDKLDKASLVHQRKLTIPFAKEML 234
           A+ RGL L ++VG F+L R AR +  LFD+L++LD+ASL  QRKLTIPF KE L
Sbjct: 180 ASRRGLHLTDEVGHFILTRGARSMSALFDLLERLDQASLQAQRKLTIPFLKETL 233