Pairwise Alignments

Query, 297 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 306 a.a., LysR family transcriptional regulator from Agrobacterium fabrum C58

 Score =  159 bits (401), Expect = 1e-43
 Identities = 104/296 (35%), Positives = 155/296 (52%), Gaps = 7/296 (2%)

Query: 5   LPPLNALRAFESAARLQSITLASKELHVTHGAISKQIRVLEDFLGFALFVRLHKKVELTD 64
           LP  +AL AF+S ARL S + A+ EL +T GAIS+Q+  LE+ LG  LF R  + V LT 
Sbjct: 9   LPSTSALAAFDSVARLGSFSAAADELALTQGAISRQVMSLEEQLGVRLFERGARGVSLTT 68

Query: 65  EAKRYFPHVQAALQTLSSATADLRSQGSRPQTLAINVLPSLTINWLIPRMEQFKSRYPHL 124
           E   Y   + AAL  + SA+  + ++ +   TL + +LP+    WL+PR+  F + +P +
Sbjct: 69  EGSAYAKSIAAALGEIRSASLQIMTK-THGNTLNLAMLPTFGTRWLLPRIPDFVANHPEI 127

Query: 125 YVDLS--IGDFAVDFSQGRYDIAIRSSTKLPKGVNYIKLMDEDLCLVCAPSL--APKLQC 180
            ++ +  IG F  DF + + D+AI        G     LM E +  VC+P    A  ++ 
Sbjct: 128 TINFATRIGQF--DFEREQLDMAIHIGQADWPGAESTFLMHEMVAPVCSPQFLSAHPVEK 185

Query: 181 IEDINHVTLLKHTTRPELWDYWAEKVGLVLTQEQTFGVEHFYMLSQAAASGMGAALIPRF 240
            EDI  + LL   +RP  W +W E +GL L   Q    E F  ++QA  +G+G AL+P F
Sbjct: 186 GEDIAALPLLHMASRPGAWGHWFESLGLSLALPQGMRFEQFSSVAQACIAGLGVALMPLF 245

Query: 241 FIEEQLANGSLVIPFHSTFTSPYVYYLLTPKSPSLPLKVQAFIEWMLDLFAPYRNA 296
            I+ +L +  LV  F     SP  YY + P S +    V  F +W++     YR A
Sbjct: 246 LIDNELKSKQLVKAFDHQARSPSSYYAVAPLSRANHAPVVLFRDWLVRQVEAYRAA 301