Pairwise Alignments

Query, 236 a.a., response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 248 a.a., Transcriptional regulatory protein YpdB from Methylophilus sp. DMC18

 Score =  114 bits (286), Expect = 1e-30
 Identities = 70/203 (34%), Positives = 116/203 (57%), Gaps = 4/203 (1%)

Query: 5   LIVDDELFAREELADSLSQEADIEIIGQCSNAIEALQTITKEKPQLVFLDIQMPRISGME 64
           LIVDDE  AR+ L D +      EI+G+ +N +EAL  + +   ++V +DI+MP + G+E
Sbjct: 7   LIVDDEPLARQRLRDLVGDIGGYEIVGEAANGVEALSLLQQHAAEIVLVDIRMPVMDGIE 66

Query: 65  LIAML-DPDTLPKIVFVTAFDEFAVKAFDNHAFDYLLKPIDADRLSKTLKRVRKDLTPQA 123
           L   L    T PK++F TA+D +A++AFD +A DYLLKPI ++RL+  L + +     Q+
Sbjct: 67  LAQHLRGLATPPKLIFTTAYDHYALQAFDLNAIDYLLKPIRSERLATALAKAQPLPAAQS 126

Query: 124 VNL-IAPRSLEHLPCYSGSKLKVIPIQDVEYVFSDLSGIHVACTKGKVHTQLTLKVLEEK 182
             L    ++ +HL  +   K+ ++PI +V Y+ ++L  I V   +     + +L  LE+ 
Sbjct: 127 QALQPLQQTHDHLSIHERGKIMLVPIAEVLYLRAELKYITVRTREKSYLLEGSLTQLEQS 186

Query: 183 TP--LVHCHRQYLISPKAIAEIE 203
            P   +  HR  L++  AI+  E
Sbjct: 187 YPDLFIRIHRNALVARAAISGFE 209