Pairwise Alignments

Query, 442 a.a., tolB protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 430 a.a., translocation protein TolB precursor (NCBI) from Escherichia coli BW25113

 Score =  385 bits (989), Expect = e-111
 Identities = 201/431 (46%), Positives = 285/431 (66%), Gaps = 12/431 (2%)

Query: 12  VLLCTTPAKAALDIVITEGVDAARPIAVMPFQWQGAGAPPQAIADVVMSDLVRSGTFKPL 71
           ++L  +   A + IVI  GVD+ RPI V+PFQW G GA P+ I  +V +DL  SG F PL
Sbjct: 12  LILWASVLHAEVRIVIDSGVDSGRPIGVVPFQWAGPGAAPEDIGGIVAADLRNSGKFNPL 71

Query: 72  DELGLPQRGIGALAQFDANAWTNVSAEALVVGSVKPYGADQFLVSFELIDLVKAQNQALK 131
           D   LPQ+  G+  +    AW+ +  +A+VVG V P     + V+++L+D          
Sbjct: 72  DRARLPQQP-GSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDT--------- 121

Query: 132 GSANPTELLMDSRQTVISATQFRQYGHRISDIVYEKLTGIRGAFLTRISYVVVNHSQKAA 191
           G A  T L  +S +  ++    R  GH  SD V+EKLTGI+GAF TRI+YVV  +  +  
Sbjct: 122 GGAPGTVLAQNSYK--VNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFP 179

Query: 192 YSLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRRLAYVSFENKKAEIFVQDLYTQVRTKV 251
           Y L ++DYDGYN+ ++ RSP+PLMSPAWSPDG +LAYV+FE+ ++ + +Q L      +V
Sbjct: 180 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV 239

Query: 252 SSFSGINGAPSFSPDGKSLAVTLSKDGQPEIYVIDIATKAIKRITNHYSIDTEPSWYPDG 311
           +SF   NGAP+FSPDG  LA  LSK G   +YV+D+A+  I+++T+  S +TEP+W+PD 
Sbjct: 240 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDS 299

Query: 312 KSLLFTSERGGRPQLYRVDLNSGKVTRETFEGEWNLGGSITPDGRSMIFVNRTNGKFNIA 371
           ++L FTS++ GRPQ+Y+V++N G   R T+EG  N    ++ DG+ M+ V+   G+ +IA
Sbjct: 300 QNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIA 359

Query: 372 RMDLSTRFMQVLTSTRLDESPSVAPNGTMVIYGTTHQGKQVLAAVSTDGRFKARLPAGQG 431
           + DL+T  +QVL+ST LDE+PS+APNGTMVIY ++     VL  VSTDGRFKARLPA  G
Sbjct: 360 KQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDG 419

Query: 432 EVKSPSWSPFL 442
           +VK P+WSP+L
Sbjct: 420 QVKFPAWSPYL 430