Pairwise Alignments

Query, 442 a.a., tolB protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 276 a.a., tolB protein from Agrobacterium fabrum C58

 Score = 66.2 bits (160), Expect = 1e-15
 Identities = 62/249 (24%), Positives = 107/249 (42%), Gaps = 15/249 (6%)

Query: 205 QMLLRSPEPLMSPAWSPDGRRLAYVSFENKKAEIFVQDLYTQVRTKVSSFSGINGAPSFS 264
           +++ ++PE   +P WSPDG+ L   S E     + +    +  +      +  N     S
Sbjct: 16  RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS 74

Query: 265 PDGKSLAVTLSKD-GQPEIYVIDIATKAIKRITNHYSIDTEPSWYPDGKSLLFTSERGGR 323
           PDG   A++   + G+  IY++  +T    R+           W PDGKS  +   R   
Sbjct: 75  PDGALYAISDKVEFGKSAIYLLP-STGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQV 133

Query: 324 PQLYRVDLNSGKVTRETFEGEWNLGGSITPDGRSMIFVNRTNGKFNIARMDLSTRFMQVL 383
             +Y +D++SG  TR T     N G   +PDGR + F +   G+  I R+ +    ++ +
Sbjct: 134 FDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI 193

Query: 384 TSTRL-DESPSVAPNGTMVIYGTTHQGK-----------QVLAAVSTDGRFKARLPAGQG 431
           T +   D  P  +P+G  V++ +                Q++     +      L  GQG
Sbjct: 194 TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQG 253

Query: 432 EVKSPSWSP 440
            + SP+WSP
Sbjct: 254 TMNSPNWSP 262



 Score = 64.7 bits (156), Expect = 3e-15
 Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 11/154 (7%)

Query: 219 WSPDGRRLAYVSFENKKAEIFVQDLYTQVRTKVSSFSGINGAPSFSPDGKSLAVTLSKDG 278
           WSPDG+   Y    ++  +I+  D+ + V T+++   G N  P +SPDG+ +    S+ G
Sbjct: 117 WSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTG 176

Query: 279 QPEIYVIDIATKAIKRITNHYSIDTEPSWYPDGKSLLFTS----------ERGGRPQLYR 328
           Q +I+ + +   +++RIT+    D  P   P G  ++F S          +   R QL  
Sbjct: 177 QMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMD 236

Query: 329 VDLNSGKVTRETFEGEWNLGG-SITPDGRSMIFV 361
           +D  + +   + F G+  +   + +PDG    +V
Sbjct: 237 MDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYV 270



 Score = 38.5 bits (88), Expect = 3e-07
 Identities = 39/163 (23%), Positives = 65/163 (39%), Gaps = 8/163 (4%)

Query: 282 IYVIDIATKAIKRITNHYSIDTEPSWYPDGKSLLFTSERGGRPQLYRVDL---NSGKVTR 338
           I + +I T+ ++ +     +   P+W PDGK LL  SE      LYR+ L    S +   
Sbjct: 5   IEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSE----GLLYRLSLAGDPSPEKVD 60

Query: 339 ETFEGEWNLGGSITPDGRSMIFVNRTN-GKFNIARMDLSTRFMQVLTSTRLDESPSVAPN 397
             F    N    I+PDG      ++   GK  I  +  +    +++T          +P+
Sbjct: 61  TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPD 120

Query: 398 GTMVIYGTTHQGKQVLAAVSTDGRFKARLPAGQGEVKSPSWSP 440
           G    Y         + ++  D   + RL  G+G    P +SP
Sbjct: 121 GKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSP 163



 Score = 31.2 bits (69), Expect = 4e-05
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 183 VVNHSQKAAYSLMIADYDGYNEQMLLR---SPEPLMSPAWSPDGRRLAYVSF 231
           V +H +     + + D DG N + L         + SP WSPDG   AYV +
Sbjct: 221 VFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRY 272



 Score = 28.1 bits (61), Expect = 4e-04
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 17/105 (16%)

Query: 181 YVVVNHSQKAAYSLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRRLAYVSFENKKAEIFV 240
           ++  N S+     +     DG + + +  S      P  SP G ++ +VS++   A++F 
Sbjct: 167 WIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYD---ADVFD 223

Query: 241 QDLYTQVRTKVSSFSGIN--------------GAPSFSPDGKSLA 271
                 VR ++    G N               +P++SPDG   A
Sbjct: 224 HPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFA 268