Pairwise Alignments

Query, 250 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 355 a.a., tol-pal system protein YbgF from Magnetospirillum magneticum AMB-1

 Score = 61.6 bits (148), Expect = 2e-14
 Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 6/113 (5%)

Query: 101 ATPAASVP---ATPAAVAATANAAASSLSETASYESAVNLVLKERKYDDAIPAFRAFIKQ 157
           A PA ++    A   A AA A  AA   +++A YE A  L  K   YD A   FR+F+K 
Sbjct: 200 AMPAGALKKGEAEAQAQAAKAPPAAPKDAQSA-YEEAYGLAQKG-DYDGAEQGFRSFLKT 257

Query: 158 YPDSVYAANANYWLGQLLFN-KSEFAEAKQVFNTVVTRFSDSNKRGDSLVKLG 209
           YP+   A NA YWLG + F+ + +FA + ++F     ++    K  D L KLG
Sbjct: 258 YPNHQLAGNAQYWLGDIAFSQRKDFATSAKLFGEAYKKYPKHTKAPDMLYKLG 310



 Score = 23.5 bits (49), Expect = 0.006
 Identities = 56/275 (20%), Positives = 95/275 (34%), Gaps = 46/275 (16%)

Query: 1   MKRAVLITAMF-FGAGAAVAAPAPVEDLAGGSGDDRLARLERIVKSRQQSEID------- 52
           ++R VL TA+     GAA  +PA  +       D R+ RLER + + Q            
Sbjct: 19  VRRFVLSTALSALLIGAAFVSPASAQSDTRALYD-RIERLERDLMTLQSQSARGGSTVVR 77

Query: 53  ---------------MQRRLDTLQQEVLDLRGLTEQQNYQIEQMQQRQRQLYDEI----A 93
                          ++ R++ L+     L G  E+ N++  Q+ ++  ++  +I     
Sbjct: 78  SSANDGSVSGSAASRLEDRINELEDANRFLTGKIEEANFKAAQLNKQLERMQADIDLRFK 137

Query: 94  NLSSKATATPAASVPATPAAVAATANAAASSLSETASYESAVNLVLKERKYDDAIPAFRA 153
           +L      + +++ P + +  AA+A A   S +        V         D   P    
Sbjct: 138 DLEGGKGGSSSSAQPQSMSMPAASAPATTPSGAPVLIPPKGVKPGANSADNDGPAPG--- 194

Query: 154 FIKQYPDSVYAANANYWLGQLLFNKSEFAEAKQVFNTVVTRFSDSNKRGDSLVKLGMIAE 213
                P ++ A  A          K E     Q          D+    +    L     
Sbjct: 195 -----PQNLGAMPAG------ALKKGEAEAQAQAAKAPPAAPKDAQSAYEEAYGLA---- 239

Query: 214 KTGDKAGATQYYQQVVKDYANSAAARIAQQQLAAI 248
           + GD  GA Q ++  +K Y N   A  AQ  L  I
Sbjct: 240 QKGDYDGAEQGFRSFLKTYPNHQLAGNAQYWLGDI 274