Pairwise Alignments

Query, 590 a.a., DNA damage response helicase (yejH or radD) (from data) from Shewanella oneidensis MR-1

Subject, 779 a.a., hypothetical protein from Methylophilus sp. DMC18

 Score = 62.8 bits (151), Expect = 5e-14
 Identities = 99/405 (24%), Positives = 163/405 (40%), Gaps = 86/405 (21%)

Query: 12  RDYQQQAVDAAIVHFKKSTDSAVLVLPTGAGKSIVIAELA-RI----ARGRVLVLTHVKE 66
           R YQ  A++  I    K     +LV+ TG GK+    ++  R+    A+ R+L L     
Sbjct: 167 RYYQANAINKTIEAVAKGQQRVLLVMATGTGKTYTAFQIIWRLWKSGAKKRILFLADRNI 226

Query: 67  LVAQNAQKVGLLTTEASIYSAGLNK--KSSVGKT---------VVASIQSAARALGQFNE 115
           LV Q          +   + A + K  K  + K           V   +       QF+ 
Sbjct: 227 LVDQTKNN------DFKPFGAAMTKISKRQIDKAYEIYLSLYQAVTGNEEDKNIYKQFSP 280

Query: 116 PF-SLVIIDECHRVSLEKTSQYQQLLSHLQQRNPQLKLLGLTATPYRLGTGWIYKRHYHG 174
            F  L+++DECHR S  + S ++++L +  +       +GLTATP    T  +    Y G
Sbjct: 281 DFFDLIVVDECHRGSAAEDSAWREVLEYFNKATH----IGLTATPKE--TKEVSSITYFG 334

Query: 175 KVGSPELGIFEQCIFELPIRPLIKQGYLTAPTLFDGLSAQYDFSQIKANKN--GEYPEAQ 232
                          E      +KQG      + DG  A Y   +I  +K+  G  P A 
Sbjct: 335 ---------------EPVYSYTLKQG------IEDGFLAPYKVVRIDLDKDLQGWRPTAG 373

Query: 233 VND---------LLNHAGRATTAIVKQLIELSHHR-----------QGIIIFAATVRHAE 272
             D         + N +    T +++Q  +L   +              I+F   + HAE
Sbjct: 374 QTDKRGQLIKDRIYNQSDMDRTLVLEQRTQLVAQKITEFLRETDPYAKTIVFCDDIDHAE 433

Query: 273 ---EIVSQLN----KEHREQTAIVTAQTPDNERDELIERFKARELKFLV---NVAVLTTG 322
              + +  LN    KE+R+    +T    +NE    ++ F   E ++ V      ++TTG
Sbjct: 434 RMRQALVNLNPDRVKENRKYVMRITGD--ENEGKAELDNFINPEERYPVIATTSKLMTTG 491

Query: 323 FDAPHVDLIAILRPTASVSLFQQMIGRGLRICE--GKKDCLVIDY 365
            DA    L+ + +   S++ F+Q+IGRG RI E  GK    ++D+
Sbjct: 492 VDAQTCKLVVLDQHIKSMTEFKQIIGRGTRINEDYGKFWFTIMDF 536