Pairwise Alignments

Query, 590 a.a., DNA damage response helicase (yejH or radD) (from data) from Shewanella oneidensis MR-1

Subject, 584 a.a., ATP-dependent helicase from Erwinia amylovora T8

 Score =  612 bits (1579), Expect = e-179
 Identities = 313/586 (53%), Positives = 405/586 (69%), Gaps = 10/586 (1%)

Query: 8   SVILRDYQQQAVDAAIVHFKKSTDSAVLVLPTGAGKSIVIAELARIARGRVLVLTHVKEL 67
           S  LR YQQ+AVDAAI +F++S   AV+VLPTGAGKS+VIAELAR+ARGRVLVL HVKEL
Sbjct: 2   SFTLRPYQQEAVDAAIRYFRRSIQPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKEL 61

Query: 68  VAQNAQKVGLLTTEASIYSAGLNKKSSVGKTVVASIQSAARALGQFNEPFSLVIIDECHR 127
           +AQN  K      EA I++AGL +K S  K V  S+QS AR L QFN  FSL+IIDECHR
Sbjct: 62  IAQNHAKYLAYGLEADIFAAGLQRKESQAKVVFGSVQSVARNLEQFNAQFSLLIIDECHR 121

Query: 128 VSLEKTSQYQQLLSHLQQRNPQLKLLGLTATPYRLGTGWIYKRHYHGKVGSPELGIFEQC 187
           +S    SQYQQ+++ L+Q NP L+LLGLTATPYRLG GWIY+ HYHG V   E  +F  C
Sbjct: 122 ISDADDSQYQQIINQLRQYNPGLRLLGLTATPYRLGKGWIYQFHYHGMVRGAESALFRDC 181

Query: 188 IFELPIRPLIKQGYLTAPTLFDGLSAQYDFSQIKANKNGEYPEAQVNDLLNHAGRATTAI 247
           I+ELP+R +IK G+L  P   D    QYDFS+++  ++G + EA +N  L    R T  I
Sbjct: 182 IYELPLRYMIKHGFLVPPERLDMPVVQYDFSRLQVQESGLFSEADLNRELKQQQRITPHI 241

Query: 248 VKQLIELSHHRQGIIIFAATVRHAEEIVSQLNKEHREQTAIVTAQTPDNERDELIERFKA 307
           ++Q++E +  R+G++IFAATV HA EI+  L        A+++A TP  ERD LI  FKA
Sbjct: 242 IQQIVEFAQQREGVMIFAATVEHAREILGLL----PGSKALISAATPPAERDALIAAFKA 297

Query: 308 RELKFLVNVAVLTTGFDAPHVDLIAILRPTASVSLFQQMIGRGLRICEGKKDCLVIDYAA 367
           R+L ++VNVAVLTTGFDAPHVDLIAILRPT SVSL+QQ++GRGLR+  GK DCL++DYA 
Sbjct: 298 RKLLYMVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLSPGKSDCLILDYAG 357

Query: 368 NGYDLYFPEVGQAKPNSKSVPVQVHCPVCQFANIFWGLTDDDGDIIEHFGRRCQGIVE-H 426
           N +DL+ PEVG  K  S + PVQV CP C FANIFWG T  DG +I+HFGRRCQGI+E  
Sbjct: 358 NPHDLFTPEVGAPKGKSDNQPVQVFCPGCGFANIFWGKTTSDGTLIKHFGRRCQGILEDD 417

Query: 427 HGKKQQCDFRFRAKSCPDCGQENDIAARICQHCQSTLIDPDKRLKQVLNKQHHHLFRCQH 486
            G+++QCD+RFR KSCP C   NDIAAR C+ C + L+DPD  LK  L  +   + RC  
Sbjct: 418 EGRREQCDYRFRFKSCPHCNAGNDIAARRCRECDAILVDPDDMLKAALKLKDALVLRCAA 477

Query: 487 MTL---MDDAGD-LKVQYLDIDGNEFNRHFKLQTPAQWRALYALFIFPHSRTPGLKPKQY 542
           M L    D+ G+ L+ +Y D D +E +  F+L+TPAQ  A   LF+ PH R PG+ P  +
Sbjct: 478 MVLESGSDEHGEWLQARYYDEDASEVSERFRLKTPAQRTAFEQLFLRPHQRAPGV-PLGW 536

Query: 543 KQVSELIADSATFKMPDLLLLKKHKKGWDLLESYFDYQGRYQTENK 588
           K  ++++A     + PD ++ +K +  W + E  FDYQGR++  N+
Sbjct: 537 KNAADIVALQPLLRHPDFIVARKQRHFWSVREKVFDYQGRFRRANE 582