Pairwise Alignments

Query, 590 a.a., DNA damage response helicase (yejH or radD) (from data) from Shewanella oneidensis MR-1

Subject, 586 a.a., Putative DNA repair helicase RadD from Escherichia fergusonii Becca

 Score =  623 bits (1606), Expect = 0.0
 Identities = 316/579 (54%), Positives = 404/579 (69%), Gaps = 9/579 (1%)

Query: 11  LRDYQQQAVDAAIVHFKKSTDSAVLVLPTGAGKSIVIAELARIARGRVLVLTHVKELVAQ 70
           LR YQQ+AVDA + HF++    AV+VLPTGAGKS+VIAELAR+ARGRVLVL HVKELVAQ
Sbjct: 5   LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQ 64

Query: 71  NAQKVGLLTTEASIYSAGLNKKSSVGKTVVASIQSAARALGQFNEPFSLVIIDECHRVSL 130
           N +K   L  EA I++AGL +K S GK V  S+QS  R L  F   FSL+I+DECHR+  
Sbjct: 65  NHEKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVTRNLDAFQGEFSLLIVDECHRIGD 124

Query: 131 EKTSQYQQLLSHLQQRNPQLKLLGLTATPYRLGTGWIYKRHYHGKVGSPELGIFEQCIFE 190
           ++ SQYQQ+L+HL + NP L+LLGLTATP+RLG GWIY+ HYHG V   E  +F  CI+E
Sbjct: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184

Query: 191 LPIRPLIKQGYLTAPTLFDGLSAQYDFSQIKANKNGEYPEAQVNDLLNHAGRATTAIVKQ 250
           LP+R +IK GYLT P   D    QYDFS+++A  NG + EA +N  L    R T  I+ Q
Sbjct: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244

Query: 251 LIELSHHRQGIIIFAATVRHAEEIVSQLNKEHREQTAIVTAQTPDNERDELIERFKAREL 310
           ++E +  R+G++IFAATV HA+EIV  L     E  A++T  TP +ERD LI+ FKA+  
Sbjct: 245 IMEFAATRKGVMIFAATVEHAKEIVGLL---PAEDAALITGDTPGSERDVLIDDFKAQRF 301

Query: 311 KFLVNVAVLTTGFDAPHVDLIAILRPTASVSLFQQMIGRGLRICEGKKDCLVIDYAANGY 370
           ++LVNVAVLTTGFDAPHVDLIAILRPT SVSL+QQ++GRGLR+  GK DCL++DYA N +
Sbjct: 302 RYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPH 361

Query: 371 DLYFPEVGQAKPNSKSVPVQVHCPVCQFANIFWGLTDDDGDIIEHFGRRCQGIVE-HHGK 429
           DLY PEVG  K  S +VPVQV CP C FAN FWG T  DG +IEHFGRRCQG  E   G 
Sbjct: 362 DLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGH 421

Query: 430 KQQCDFRFRAKSCPDCGQENDIAARICQHCQSTLIDPDKRLKQVLNKQHHHLFRCQHMTL 489
           ++QCDFRFR K+CP C  ENDIAAR C+ C + L+DPD  LK  L  +   + RC  M+L
Sbjct: 422 REQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMSL 481

Query: 490 M---DDAGD-LKVQYLDIDGNEFNRHFKLQTPAQWRALYALFIFPHSRTPGLKPKQYKQV 545
               D+ G+ LK+ Y D DG + +  F+LQTPAQ  A   LFI PH+RTPG+ P ++   
Sbjct: 482 QHGHDEKGEWLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGI-PLRWITA 540

Query: 546 SELIADSATFKMPDLLLLKKHKKGWDLLESYFDYQGRYQ 584
           ++++A  A  + PD ++ +   + W + E  FDY+GR++
Sbjct: 541 ADILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFR 579