Pairwise Alignments

Query, 553 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 691 a.a., tail tape measure protein from Escherichia coli ECRC98

 Score =  164 bits (414), Expect = 1e-44
 Identities = 133/506 (26%), Positives = 216/506 (42%), Gaps = 80/506 (15%)

Query: 1   MSKKLVTDIVLNLSGNLSEKAIRYGDQIKNLGEKSKVGFGMISSSAAAASRGIDTFGNRA 60
           M++ L   ++++L GN+S K+ ++  ++       + G G + ++A  A +  D  G+R 
Sbjct: 1   MARNLRASLIVDLLGNISAKSRQWSQELGAFSRSGQAGLGGLGNAARRAGQETDVLGSRM 60

Query: 61  ----------------------------------ILGVSAGAIA---FERTFIKTAAEFE 83
                                             + G+ AG  A   F R FI+ AAE E
Sbjct: 61  QRTLAGVRGSIRHVTSDFDRLQGSITGTIGRISNLYGMLAGGAAVYGFNRGFIRPAAEME 120

Query: 84  RYQIMLNKL-QGSEANGLKAMEWIEKFTQETPYGVNEVMNSFIRLKAFGLDPMDGS--LQ 140
            Y I LN L +G  A       W  +  +ET +G+  VM  +     FG+   +    + 
Sbjct: 121 TYMIRLNSLYKGDRAKTDDVRRWAIQNAKETTWGLAGVMQEYTSSLGFGMSDREARNFVT 180

Query: 141 AIADQAAMMGGTAETVDGIALALGQAWTKGKLQGEEALQLLERGVPVWDYLIKASKDLGK 200
            + DQ A+ G +     G +L L Q + +G +Q  +A  L   G+  +  L         
Sbjct: 181 MLQDQGAVGGWSLSDAQGASLQLKQMYARGSIQAADANILATYGINAYRVLA-------- 232

Query: 201 NNGVGYTAAQLQDMASKGLLTRDAIKSLIKEMGSASQGSSKKQMESWNGMISNMGDAWTI 260
            + +G     ++ +  KGLL  D+I+ L + +   ++G+ K  M SW+G+ + MGD W  
Sbjct: 233 -DRLGVDQKVVRKLGEKGLLGPDSIRLLFQTLAEQARGAQKDAMNSWSGLTAMMGDVWDQ 291

Query: 261 FKKDVMSSGAFTVLKTELGGVLKQLDEMKKTGEYDKLVEKVGKDLVEGFKTAAEAARGLR 320
           F +DVM SG F  LK  L G L  +D  K  G Y  L E     + +GF+ A +A  G  
Sbjct: 292 FARDVMDSGPFEKLKGNLRGFLSWVDSAKSDGSYHSLAESTASAMNQGFEYARDAVTGFY 351

Query: 321 DVGRDLLPILKAI-GSGASAIADAVG-GYENLAKILLSVYMLNKALRI-----------G 367
              R +   L+A+  +G     D +G G +  AK LL +Y+  +AL++           G
Sbjct: 352 QAIRKVRDTLQALRDAGYGDALDRIGQGAQTAAKYLLYMYLATRALKMARAVGTGIIRPG 411

Query: 368 APLLKGAIGAGGFVFD---------KATGGLGGKGK------GGISDLGVMPVYVVNMGA 412
           A LL   + A  F+              G   G+G+       G++   V PV V N   
Sbjct: 412 AALLGYGLSAAAFLTSPFRRSPPAGTPPGTSQGRGQRFINFLTGVNPAAVQPVLVTNWPT 471

Query: 413 GGMGG-GLPDGVDPTGTKKGASKASR 437
           GG+ G G  D    +G ++G  +  R
Sbjct: 472 GGLSGTGATD--TSSGGRQGRGRRKR 495