Pairwise Alignments

Query, 372 a.a., tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 374 a.a., tRNA 2-thiouridylase from Pseudomonas simiae WCS417

 Score =  499 bits (1286), Expect = e-146
 Identities = 242/363 (66%), Positives = 293/363 (80%), Gaps = 4/363 (1%)

Query: 6   PTHTGKK-VIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNDEYCAAAEDLKDAQ 64
           P+ T KK VIVGMSGGVDSSVSA LLM+QGY+VEGLFMKNWEEDD  EYC A +DL DAQ
Sbjct: 6   PSDTQKKRVIVGMSGGVDSSVSAVLLMEQGYEVEGLFMKNWEEDDGTEYCTAMDDLADAQ 65

Query: 65  AVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADDIL 124
           AVCDK+GIKLHT NFAAEYWDNVFE+FLAEYKAGRTPNPDI+CN+EIKFKAFL++A  +L
Sbjct: 66  AVCDKIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYAM-ML 124

Query: 125 DADYIAMGHYVRRRDNEDGTTQMLRGVDNNKDQSYFLYTLSHEQVARSLFPVGELEKHEV 184
            AD IA GHYVRRRD  DG T++L+G+D NKDQSYFL+ +  EQ+A++LFPVGELEK EV
Sbjct: 125 GADLIATGHYVRRRDI-DGRTELLKGLDPNKDQSYFLHAVGGEQIAKTLFPVGELEKPEV 183

Query: 185 REIAKQMGLITHDKKDSTGICFIGERKFTEFLGNYLPAQPGNIETADGEVIGTHQGLMYH 244
           R IA++ GL T  KKDSTGICFIGER+F++FL  YLPAQPG I+T +GEVIG H GLMYH
Sbjct: 184 RRIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLPAQPGEIKTTEGEVIGRHHGLMYH 243

Query: 245 TLGQRKGLGIGGMKNSNDDPWYVVDKDLKRNVLVVGQGGHHPRLMSNGMLVNQLHWVDRK 304
           T+GQR+GLGIGG+K++ ++PWYV+ KDL+ N L+VGQG  HP L S  +L ++++WV+  
Sbjct: 244 TIGQRQGLGIGGLKDAGEEPWYVLIKDLEHNELIVGQGNEHPLLFSGALLASEIYWVNPI 303

Query: 305 GPINGSQIVVKTRYRQQDIPCTLTYLDDNTLKVVFDEPVAAVTPGQSAVFYDGEVCLGGG 364
                 ++  K RYRQ D PCTL        + +FD+P  AVTPGQS VFYDGE+CLGGG
Sbjct: 304 DLSTPRRLTAKVRYRQSDQPCTLEKTATG-YRAIFDDPQRAVTPGQSVVFYDGEICLGGG 362

Query: 365 IID 367
           +I+
Sbjct: 363 VIE 365