Pairwise Alignments

Query, 318 a.a., DNA polymerase III, delta prime subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 329 a.a., DNA polymerase III subunit delta' from Pseudomonas simiae WCS417

 Score =  128 bits (321), Expect = 2e-34
 Identities = 87/234 (37%), Positives = 118/234 (50%), Gaps = 9/234 (3%)

Query: 13  PWLDVPRQAFLTQLQTQKVPHAQLVGIDSAYGGELLSVFMARAAMCSQPTHTGGCGFCKS 72
           PW D   Q    + Q     HA L+      G   L+  +  + +C +P +   CG CKS
Sbjct: 6   PWQDSLWQQLAGRAQHA---HAYLLHGPVGIGKRDLAERLMASLLCQRPVNLEACGECKS 62

Query: 73  CQLFDAGNHPDFYQIEAD--GHQIKVDQIRELCSRLSATAQQSGRRVAIIHHSERLNSAS 130
           C L  AG+HPD Y +E +     IKVDQ+R+L S +  TAQ  GR+V +I   E +N  +
Sbjct: 63  CLLLKAGSHPDNYLLEPEEADKAIKVDQVRDLVSFVVQTAQMGGRKVVLIEPVEAMNINA 122

Query: 131 ANALLKTLEEPGKDTLLLLHSDTPARLMATISSRCQRLPFVAPSKTLIKNWLIQ---QCQ 187
           ANALLK+LEEP  DT+LLL S   +RL+ TI SRC +     PS+ +   WL Q    C 
Sbjct: 123 ANALLKSLEEPSGDTVLLLVSHQSSRLLPTIRSRCVQQACPLPSEAMSLEWLAQALPACS 182

Query: 188 IQEDVTWCLSVVGGPLKLAESLQSNSTQPSRYQTLLGFRKDWAQSLSSGHLCAS 241
             E V       G PL  A  LQ+   +  R   + G +K   Q +S+  L  S
Sbjct: 183 QDERVELLTLAAGSPL-AAVKLQAQGVREQRALVVDGVKKLIKQEVSATQLAES 235