Pairwise Alignments

Query, 318 a.a., DNA polymerase III, delta prime subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 691 a.a., DNA polymerase III, gamma subunit from Pseudomonas putida KT2440

 Score = 75.9 bits (185), Expect = 3e-18
 Identities = 62/234 (26%), Positives = 96/234 (41%), Gaps = 7/234 (2%)

Query: 20  QAFLTQLQTQKVPHAQLVGIDSAYGGELLSVFMARAAMCSQPTHTGGCGFCKSCQLFDAG 79
           +A +  L  Q++ HA L       G   ++  +A+   C     +  CG C  C+  D G
Sbjct: 26  KALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNCETGITSTPCGTCSVCREIDEG 85

Query: 80  NHPDFYQIEADGHQIKVDQIRELCSRLSATAQQSGRRVAIIHHSERLNSASANALLKTLE 139
              D  +I+A   + KV+  REL   +     +   +V +I     L++ S NALLKTLE
Sbjct: 86  RFVDLIEIDA-ASRTKVEDTRELLDNVQYAPSRGRFKVYLIDEVHMLSTHSFNALLKTLE 144

Query: 140 EPGKDTLLLLHSDTPARLMATISSRCQRLPFVAPSKTLIKNWL-----IQQCQIQEDVTW 194
           EP      +L +  P +L ATI SRC +      S   +   L      +    +ED  W
Sbjct: 145 EPPPYVKFILATTDPQKLPATILSRCLQFSLKNMSPERVVEHLSHVLAAENVPFEEDALW 204

Query: 195 CLS-VVGGPLKLAESLQSNSTQPSRYQTLLGFRKDWAQSLSSGHLCASLLIISE 247
            L     G ++ A SL   +      + L    +    SL  G +   L  + E
Sbjct: 205 LLGRAADGSMRDAMSLTDQAIAFGEGKVLAADVRAMLGSLDHGQVYGVLQALLE 258