Pairwise Alignments

Query, 318 a.a., DNA polymerase III, delta prime subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 374 a.a., DNA polymerase III subunit delta from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 63.2 bits (152), Expect = 1e-14
 Identities = 55/216 (25%), Positives = 86/216 (39%), Gaps = 43/216 (19%)

Query: 19  RQAFLTQLQTQKVPHAQLVGIDSAYGGELLSVFMARAAMCSQPTHTGGCGFCKSCQLFDA 78
           +Q  L  +Q   V HAQL           L++  A    C        CG C SC   + 
Sbjct: 13  KQLLLKSVQQNHVAHAQLFLGQEGSANLALALAYATYINCEDKQPDDSCGTCGSCVKMNR 72

Query: 79  GNHPDF-----------------------------------------YQIEADGHQ--IK 95
             HPDF                                           I A+  Q  I 
Sbjct: 73  LVHPDFNFVMPVTATKAVSKDALSNKFMNEWREFILSSPFQGLNEWMQHIGAENKQGIIS 132

Query: 96  VDQIRELCSRLSATAQQSGRRVAIIHHSERLNSASANALLKTLEEPGKDTLLLLHSDTPA 155
            D+ R+L   +S  A +   ++ +I   E ++ ++ANALLK LEEP   TL LL S +  
Sbjct: 133 KDESRQLVKLVSLKAFEGACKIVVIWLPELMHPSAANALLKLLEEPPAQTLFLLVSQSAE 192

Query: 156 RLMATISSRCQRLPFVAPSKTLIKNWLIQQCQIQED 191
           +L+ATI+SR Q +     ++  +  ++ Q+  +++D
Sbjct: 193 KLLATITSRTQIMQVRNFTEQEVMQFVQQKYNLEDD 228