Pairwise Alignments

Query, 318 a.a., DNA polymerase III, delta prime subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 334 a.a., DNA polymerase III delta prime subunit (EC 2.7.7.7) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  125 bits (313), Expect = 2e-33
 Identities = 95/304 (31%), Positives = 138/304 (45%), Gaps = 38/304 (12%)

Query: 13  PWLDVPRQAFLTQLQTQKVPHAQLVGIDSAYGGELLSVFMARAAMCSQPTHTGGCGFCKS 72
           PWL    +  +   Q  +  HA L+      G E L   ++R  +C QP     CG C+ 
Sbjct: 5   PWLRPAYEKLVESYQAGRGHHALLIQALPGMGDEALCYALSRYLLCQQPEGHKSCGHCRG 64

Query: 73  CQLFDAGNHPDFYQIEADGHQ--IKVDQIRELCSRLSATAQQSGRRVAIIHHSERLNSAS 130
           CQL  AG HPD+Y +  D  +  + VD +RE+  +L   ++  G +V  I  +  L  A+
Sbjct: 65  CQLMQAGTHPDYYTLTPDKGKSSLGVDAVREVSEKLYEHSRLGGAKVVWIADAALLTDAA 124

Query: 131 ANALLKTLEEPGKDTLLLLHSDTPARLMATISSRCQRLPFVAPSKTLIKNWLIQQCQIQE 190
           ANALLKTLEEP + T   L S  PARL+AT+ SRC+      PS++   +WL ++    +
Sbjct: 125 ANALLKTLEEPPEQTWFFLASPEPARLLATLRSRCRLHHLAPPSESYAMSWLSREVTASQ 184

Query: 191 DVTWCLSVVGGPLKLAESLQSNSTQPSRYQTLLGFRKDWAQ----------SLSSGHLCA 240
           +             L  +L+ N+  P     LL   + WAQ          SL +G   A
Sbjct: 185 EA------------LLTALRLNAGSPGAALALLQSER-WAQREALCQALMDSLHTGDWYA 231

Query: 241 SLLIISEQQIIDALKVLYLLLRQIL--------LKNGNQDAYVQAQIGNLA-----AKVM 287
            L  ++ +Q    L  L  LL   L        L N + DA V A  G L+     A + 
Sbjct: 232 VLTALNHEQAPARLHWLATLLVDALKRQHGASYLTNVDADAVVAALAGPLSPARIQAILN 291

Query: 288 GMCH 291
            +CH
Sbjct: 292 DVCH 295