Pairwise Alignments

Query, 318 a.a., DNA polymerase III, delta prime subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 334 a.a., DNA polymerase III subunit delta' (NCBI) from Escherichia coli BW25113

 Score =  115 bits (288), Expect = 1e-30
 Identities = 81/277 (29%), Positives = 129/277 (46%), Gaps = 7/277 (2%)

Query: 13  PWLDVPRQAFLTQLQTQKVPHAQLVGIDSAYGGELLSVFMARAAMCSQPTHTGGCGFCKS 72
           PWL    +  +   Q  +  HA L+      G + L   ++R  +C QP     CG C+ 
Sbjct: 5   PWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRG 64

Query: 73  CQLFDAGNHPDFYQI--EADGHQIKVDQIRELCSRLSATAQQSGRRVAIIHHSERLNSAS 130
           CQL  AG HPD+Y +  E   + + VD +RE+  +L+  A+  G +V  +  +  L  A+
Sbjct: 65  CQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAA 124

Query: 131 ANALLKTLEEPGKDTLLLLHSDTPARLMATISSRCQRLPFVAPSKTLIKNWLIQQCQIQE 190
           ANALLKTLEEP  +T   L +  P RL+AT+ SRC+      P +     WL ++  + +
Sbjct: 125 ANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVTMSQ 184

Query: 191 D-VTWCLSVVGGPLKLAESLQSNSTQPSRYQTLLGFRKDWAQSLSSGHLCASLLIISEQQ 249
           D +   L +  G    A +L       +R +TL    +  A S+ SG   + L  ++ +Q
Sbjct: 185 DALLAALRLSAGSPGAALALFQGDNWQAR-ETLC---QALAYSVPSGDWYSLLAALNHEQ 240

Query: 250 IIDALKVLYLLLRQILLKNGNQDAYVQAQIGNLAAKV 286
               L  L  LL   L ++          +  L A++
Sbjct: 241 APARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAEL 277