Pairwise Alignments

Query, 336 a.a., BNR repeat protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 933 a.a., Uncharacterized protein related to plant photosystem II stability/assembly factor from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 59.7 bits (143), Expect = 3e-13
 Identities = 56/245 (22%), Positives = 102/245 (41%), Gaps = 29/245 (11%)

Query: 68  WQQVPTPTSVQLTKVFFLNEKFGWAVGHDATILHTQDGGQTWSLQMQSTEIEKPFLDVLF 127
           WQQ+ +  S  L  ++F N+  G+AVG + TIL T D G  W+     T  +  +  V F
Sbjct: 185 WQQLTSSVSTALNDLYFTNDTTGYAVGDEGTILKTVDSGNHWAFIQSGTNYD--YKRVAF 242

Query: 128 LNEQE--GMAIGAYGLFYRTRDGGANW-------TEEFH--------EELLAEEDVSYLA 170
             ++   G+ +G  G    T + G  +       TE+ H          ++A  D   + 
Sbjct: 243 HRDRPDIGIIVGEEGTVLYTNNAGLTFLVRNSRTTEDIHGIDYKQSTNTVVAVADGGTIL 302

Query: 171 ELKNSDQAAYLTERASLLPHFNRMIALKDGRLLLVGELGLVAMSADKGQSFTRTGFDYDG 230
              N+  +++++  +     F     + D R  + G+  ++  + + G SF     DY  
Sbjct: 303 RSTNAG-SSWISLLSGHPSDFLATDFVNDSRGYIAGKEAVIFRTTNGGDSFN----DYSR 357

Query: 231 SM---FNAIQLQDAV--YVMGLRGHVFKADLSLAQWDEIDMPVKSSINGVMATSETSLYL 285
            +   F+AI  Q     YV+G  G +     S   W  ++   +  + G+      + Y+
Sbjct: 358 PLNIDFHAIAFQSPAFGYVVGDDGTMLNTTNSGGSWTALNPKTELDLYGLYFADADTGYI 417

Query: 286 VGNAG 290
           VG +G
Sbjct: 418 VGESG 422



 Score = 55.1 bits (131), Expect = 7e-12
 Identities = 49/235 (20%), Positives = 98/235 (41%), Gaps = 41/235 (17%)

Query: 65  TDKWQQVPTPTSVQLTKVFFLNEKFGWAVGHDATILHTQDGGQTWSLQMQSTEIEKPF-- 122
           +  WQ++ T     LT + ++N+   +A G+   +L T DGG+ W      TE+  P   
Sbjct: 20  SQSWQRI-TDRGNALTDIHWVNDDLAFASGNQI-MLKTTDGGEGW------TELAMPIAA 71

Query: 123 --LDVLFLNEQEGMAIGAYGLFYRTRDGGANWTEEFHEELLAEEDVSYLAELKNSDQAAY 180
             L V F + Q G   G  G   +T+DGG +W                +  L  +     
Sbjct: 72  DLLAVDFHDHQIGAMAGKNGTLLQTKDGGQSWN---------------IINLNTTSDILT 116

Query: 181 LTERASLLPHFNRMIALKDGRLLLVGELGLVAMSADKGQSFTRTGFDYDGSMFNAIQLQ- 239
           +  R+S               + + G  G +  S++ G+++T        ++   +    
Sbjct: 117 VNYRSS-------------EEIWISGTSGTLKYSSNGGETWTSVELGTTAAINTLVFTSG 163

Query: 240 DAVYVMGLRGHVFKADLSLAQWDEIDMPVKSSINGVMATSETSLYLVGNAGIVIQ 294
           D  ++    G ++K   +   W ++   V +++N +  T++T+ Y VG+ G +++
Sbjct: 164 DQGFLATSSGAIYKTTNNGQSWQQLTSSVSTALNDLYFTNDTTGYAVGDEGTILK 218



 Score = 54.3 bits (129), Expect = 1e-11
 Identities = 43/243 (17%), Positives = 94/243 (38%), Gaps = 16/243 (6%)

Query: 66  DKWQQVPTPTSVQLTKVFFLNEKFGWAVGHDATILHTQDGGQTWSLQMQSTEIEKPFLDV 125
           D +     P ++    + F +  FG+ VG D T+L+T + G +W+     TE++     +
Sbjct: 350 DSFNDYSRPLNIDFHAIAFQSPAFGYVVGDDGTMLNTTNSGGSWTALNPKTELD--LYGL 407

Query: 126 LFLNEQEGMAIGAYGLFYRTRDGGANWTE--------EFHEELLAEEDVSYLA-----EL 172
            F +   G  +G  G    T + G NW+         ++H+    E     +       L
Sbjct: 408 YFADADTGYIVGESGYLASTVNRGVNWSTIHAGDKGYDYHDIDFFESGPGIIIGEGGHVL 467

Query: 173 KNSDQAAYLTERASLLPHFNRMIALKDGRLLLVGELGLVAMSADKGQSFTRTGFDYDGSM 232
           K++    +           + M  + +   ++VG+ G    + ++ +S+     +   ++
Sbjct: 468 KSNSNGDWQEISIGTSDDLHGMFMIDESAAIIVGDNGQAFFTQNQFESWEPLNTNTAQNL 527

Query: 233 FNAIQLQDAV-YVMGLRGHVFKADLSLAQWDEIDMPVKSSINGVMATSETSLYLVGNAGI 291
            +   L     +++G +G + +       W E+D         +      + Y VG  G+
Sbjct: 528 RDVAFLDSLTGFIVGDKGLILQTTDRGKNWTEVDTETYQDFKAISFGDVNTGYAVGEFGM 587

Query: 292 VIQ 294
           + Q
Sbjct: 588 IYQ 590



 Score = 52.8 bits (125), Expect = 4e-11
 Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 23/180 (12%)

Query: 68  WQQVPTPTSVQLTKVFFLNEKFGWAVGHDATILHTQDGGQTWSLQMQSTEIEKPFLDVLF 127
           W ++  P +  L  V F + + G   G + T+L T+DGGQ+W++   +T  +   L V +
Sbjct: 62  WTELAMPIAADLLAVDFHDHQIGAMAGKNGTLLQTKDGGQSWNIINLNTTSD--ILTVNY 119

Query: 128 LNEQEGMAIGAYGLFYRTRDGGANWTE-------EFHEELLAEEDVSYLAELKNSDQAAY 180
            + +E    G  G    + +GG  WT          +  +    D  +LA    S  A Y
Sbjct: 120 RSSEEIWISGTSGTLKYSSNGGETWTSVELGTTAAINTLVFTSGDQGFLA---TSSGAIY 176

Query: 181 LTER---------ASLLPHFNRMIALKDGRLLLVGELGLVAMSADKGQ--SFTRTGFDYD 229
            T           +S+    N +    D     VG+ G +  + D G   +F ++G +YD
Sbjct: 177 KTTNNGQSWQQLTSSVSTALNDLYFTNDTTGYAVGDEGTILKTVDSGNHWAFIQSGTNYD 236



 Score = 46.2 bits (108), Expect = 3e-09
 Identities = 44/253 (17%), Positives = 89/253 (35%), Gaps = 19/253 (7%)

Query: 66  DKWQQVPTPTSVQLTKVFFLNEKFGWAVGHDATILHTQDGGQTWSLQMQSTEIEKPFLDV 125
           + W  V   T+  +  + F +   G+       I  T + GQ+W  Q  ++ +     D+
Sbjct: 142 ETWTSVELGTTAAINTLVFTSGDQGFLATSSGAIYKTTNNGQSW--QQLTSSVSTALNDL 199

Query: 126 LFLNEQEGMAIGAYGLFYRTRDGGANW------TEEFHEELLAEEDVSYLAELKNSDQAA 179
            F N+  G A+G  G   +T D G +W      T   ++ +    D   +  +   +   
Sbjct: 200 YFTNDTTGYAVGDEGTILKTVDSGNHWAFIQSGTNYDYKRVAFHRDRPDIGIIVGEEGTV 259

Query: 180 YLTERASLLPHFNRMIALKD----------GRLLLVGELGLVAMSADKGQSFTRTGFDYD 229
             T  A L          +D            ++ V + G +  S + G S+      + 
Sbjct: 260 LYTNNAGLTFLVRNSRTTEDIHGIDYKQSTNTVVAVADGGTILRSTNAGSSWISLLSGHP 319

Query: 230 GSMFNAIQLQDA-VYVMGLRGHVFKADLSLAQWDEIDMPVKSSINGVMATSETSLYLVGN 288
                   + D+  Y+ G    +F+       +++   P+    + +   S    Y+VG+
Sbjct: 320 SDFLATDFVNDSRGYIAGKEAVIFRTTNGGDSFNDYSRPLNIDFHAIAFQSPAFGYVVGD 379

Query: 289 AGIVIQLNQDDSS 301
            G ++       S
Sbjct: 380 DGTMLNTTNSGGS 392



 Score = 29.6 bits (65), Expect = 3e-04
 Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 261 WDEIDMPVKSSINGVMATSETSLYLVGNAGIVIQLNQDDSS-SIVTRRQGENLVSIAKDN 319
           W E+ MP+ + +  V         + G  G ++Q      S +I+      +++++   +
Sbjct: 62  WTELAMPIAADLLAVDFHDHQIGAMAGKNGTLLQTKDGGQSWNIINLNTTSDILTVNYRS 121

Query: 320 QGNVWLSGSQGLL 332
              +W+SG+ G L
Sbjct: 122 SEEIWISGTSGTL 134