Pairwise Alignments

Query, 339 a.a., dihydroorotate dehydrogenase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 359 a.a., Dihydroorotate dehydrogenase (quinone) (EC 1.3.5.2) from Variovorax sp. SCN45

 Score =  333 bits (854), Expect = 4e-96
 Identities = 175/342 (51%), Positives = 223/342 (65%), Gaps = 9/342 (2%)

Query: 3   YKIAQKVMFQMDPERAHNLAIGSLRMTGNGPLNAFYAQNITPAPVSFMGLTFPNPVGLAA 62
           Y +A+  +F  DPE AH L +  L  T N PL   Y+      P+   GL+FPN VGLAA
Sbjct: 10  YGLARPFLFGFDPEHAHELTLDGLARTQNTPLACAYSAPRVSDPIQLAGLSFPNRVGLAA 69

Query: 63  GMDKDGESIDAFHAMGFGHVEVGTVTPRPQPGNDLPRLFRLKPAKAIINRMGFNNKGVDN 122
           G+DK+   IDAF AMGFG VEVGTVTP+ QPGN  PR+FRL    A+INR+GFNN+G++ 
Sbjct: 70  GLDKNARCIDAFAAMGFGFVEVGTVTPKGQPGNPKPRMFRLPQRDALINRLGFNNEGLEA 129

Query: 123 LVKNLI---------AKKTDIMVGVNIGKNKDTPVEQGKDDYLICMDKVYLHAAYIAVNI 173
            + N+          A K  +++G+NIGKN  TP+E+  DDYL C+D VY HA Y+ +NI
Sbjct: 130 FLANVQKARFRKAGGAAKQPMLLGLNIGKNAATPIERAVDDYLACLDGVYPHADYVTINI 189

Query: 174 SSPNTPGLRSLQYGDLLDELLSAIKAKQLELADKHKKYVPIALKIAPDLTIEEIENIAQA 233
           SSPNT  LRSLQ  + LD LL A+  ++  LA +H K  P+ +KIAPDL   ++  IA  
Sbjct: 190 SSPNTANLRSLQSDEALDALLGAVAERREALATRHAKRSPLFVKIAPDLDETQVAVIAAT 249

Query: 234 LIKNQFDGAIATNTTLTRDGVSGLANANESGGLSGKPLTELSTKVIKQLATCLQGQIPII 293
           L ++  DG IATNTTL RD V GL +A E+GGLSG P+ E S +VI QL   L    PII
Sbjct: 250 LKRHGMDGVIATNTTLARDAVKGLPHAEEAGGLSGAPVREASNRVIAQLRAALGSGFPII 309

Query: 294 GVGGINSAEDALAKFDAGATMVQIYSGFIYQGPKLIKEIVEA 335
           GVGGI S  DA AK  AGA +VQIY+G IY+GP L++E  +A
Sbjct: 310 GVGGILSGADAKAKIAAGADVVQIYTGLIYRGPALVREAAQA 351