Pairwise Alignments

Query, 515 a.a., transglycosylase, Slt family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 490 a.a., Membrane-bound lytic murein transglycosylase D from Pseudomonas sp. S08-1

 Score =  359 bits (921), Expect = e-103
 Identities = 197/476 (41%), Positives = 284/476 (59%), Gaps = 24/476 (5%)

Query: 46  ATEPESAQVTDVWERIRQGMQLP--VPDKKLVNYYRDWYINNPKHLEVISERAAPYMYLI 103
           + EP++   TD+WER+R G +L   +     +   R W+++NP  LE  SER + Y++ +
Sbjct: 27  SAEPQAP--TDIWERMRDGFKLQDEIGINPRIENQRLWFVSNPSFLENASERGSLYIHYV 84

Query: 104 VEELEKRHLPIEIALLPIIESAFDPSASSASAASGLWQFTTPMASHFGLEMNWWYDGRRD 163
           VE LE+R++P+E+ALLP+IESA++P A S S A G+WQF      HF L    WYDGRRD
Sbjct: 85  VERLEERNMPMELALLPVIESAYNPLAYSRSHAVGIWQFIPSTGRHFNLRQTNWYDGRRD 144

Query: 164 VPASTTAALDMLEYLYNKTNNNWLYAIAAYNTGESKVLNAIKRNEDKGLKTDFWSLDLPK 223
           + AST AAL  L  L++  N +WL A+AAYN GE  V  AI+RN+  GL TD+W+L LP+
Sbjct: 145 ITASTNAALSYLTRLHDMFNGDWLLALAAYNAGEGTVSRAIERNQKLGLPTDYWNLPLPQ 204

Query: 224 ETKRYVPQLLALAEVIKHADEYGITLAPINNSPSIEVVDIDSQIDLAMAAGLANMTTTEL 283
           ET+ YVP+LLAL++++   + YG+ L PI N P  E V     +DLA  A + +M   EL
Sbjct: 205 ETQNYVPKLLALSQIVLSPEAYGVRLNPIANEPYFEQVASKPGLDLARVAAMVDMEEDEL 264

Query: 284 AKLNPGYNRWATSPLGPHTLVLPIDKSEEFKKALAETESEARVSWLRYTIKSGDSIGSIA 343
             LNP + +  T   GP  L++PI K+E F   LA  + +  V W  Y ++SGD++ SIA
Sbjct: 265 ESLNPAFKKGITMD-GPQHLLVPIAKAELFNANLALMKPQEVVRWQEYRVRSGDNLHSIA 323

Query: 344 QKHHTTVNAIRAANGMKSNNIVAGRHLIIPVSADDKQLYALSTSQKLPKKAAGATSGNKL 403
            ++H TVN ++  N ++SN++  G+ L IP     + +  L       ++ A A +    
Sbjct: 324 NRYHLTVNTLKDVNQLRSNSLRVGQVLNIPAQGGREPVEGL-------QQVAKAPASQPQ 376

Query: 404 TYQVKSGDSLWQIAQAHNVSVKQLTAWNHLSKDSKLQTGQKLTI----------VAPQEK 453
            Y+VKSGD+LWQIA AH VS++ L  WN L+  SKL  GQ L I          VA  + 
Sbjct: 377 RYKVKSGDNLWQIANAHGVSLQDLQRWNGLNARSKLSLGQVLDIRGGSGGTGNSVAAAKS 436

Query: 454 LDSEHIRTVSYKVKSGDSLAQIASKFKVTVAELLEWNSLTPSQYILPGQVLKLVVD 509
              +++    Y+VK+GDS+  IA +FKV V  L  WN  + S+ + PGQ L L +D
Sbjct: 437 NARQNV--TYYRVKNGDSMYLIAQRFKVNVKHLQSWNPRSDSRALKPGQTLTLYLD 490