Pairwise Alignments

Query, 515 a.a., transglycosylase, Slt family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 406 a.a., Membrane-bound lytic murein transglycosylase D from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  266 bits (680), Expect = 1e-75
 Identities = 142/402 (35%), Positives = 239/402 (59%), Gaps = 27/402 (6%)

Query: 56  DVWERIRQGMQLPVPDKKLVNYYRDWYINNPKHLEVISERAAPYMYLIVEELEKRHLPIE 115
           D+W  I   +++ +P+   +   +  Y+ N  +L  ++ RA PYMY I  +++KR++P+E
Sbjct: 12  DLWAFIGDELKMGIPENDRIREQKQKYLRNKSYLHDVTLRAEPYMYWIAGQVKKRNMPME 71

Query: 116 IALLPIIESAFDPSASSASAASGLWQFTTPMASHFGLEMNWWYDGRRDVPASTTAALDML 175
           + LLPI+ESAFDP A+S + A+G+WQ       ++GL+    YD RRDV ASTTAAL+M+
Sbjct: 72  LVLLPIVESAFDPHATSGANAAGIWQIIPSTGRNYGLKQTRNYDARRDVVASTTAALNMM 131

Query: 176 EYLYNKTNNNWLYAIAAYNTGESKVLNAIKRNEDKGLKTDFWSLDLPKETKRYVPQLLAL 235
           + L    + +WL  +AAYN+GE +V+ AIK N+ +G  TDFWSL LP+ETK+YVP++LAL
Sbjct: 132 QRLNKMFDGDWLLTVAAYNSGEGRVMKAIKTNKARGKSTDFWSLPLPQETKQYVPKMLAL 191

Query: 236 AEVIKHADEYGITLAPINNSPSIEVVDIDSQIDLAMAAGLANMTTTELAKLNPGYNRWAT 295
           ++++K++  YG+ L   + S ++  V + S +++A  A +A ++ ++L   N G      
Sbjct: 192 SDILKNSKRYGVRLPTTDESRALARVHLSSPVEMAKVADMAGISVSKLKTFNAGVKGSTL 251

Query: 296 SPLGPHTLVLPIDKSEEFKKALAETESEARVSWL----------RYTIKSGDSIGSIAQK 345
              GP  +++P   +++ +++LA  E  A  S L           YT++SGD++ SIA +
Sbjct: 252 GASGPQYVMVPKKHADQLRESLASGEIAAVQSTLVADNTPLNSRVYTVRSGDTLSSIASR 311

Query: 346 HHTTVNAIRAANGMKSNNIVAGRHLIIPVSADDKQLYALSTSQKLPKKAAGATSGNKLTY 405
              +   ++  N ++ + +  G+ L I          A S++Q+L      A + + +TY
Sbjct: 312 LGVSTKDLQQWNKLRGSKLKPGQSLTIG---------AGSSAQRL------ANNSDSITY 356

Query: 406 QVKSGDSLWQIAQAHNVSVKQLTAWNHLSKDSKLQTGQKLTI 447
           +V+ GDSL  IA+ H V++K +  WN  S  + LQ G KLT+
Sbjct: 357 RVRKGDSLSSIAKRHGVNIKDVMRWN--SDTANLQPGDKLTL 396



 Score = 76.6 bits (187), Expect = 2e-18
 Identities = 60/201 (29%), Positives = 105/201 (52%), Gaps = 11/201 (5%)

Query: 320 TESEARVSWLRYTIKSGDSIGSIAQKHHTTVNAIRAAN-GMKSNNIVAG--RHLIIPVSA 376
           T  E+R +  R  + S   +  +A     +V+ ++  N G+K + + A   +++++P   
Sbjct: 207 TTDESR-ALARVHLSSPVEMAKVADMAGISVSKLKTFNAGVKGSTLGASGPQYVMVPKKH 265

Query: 377 DDKQLYALSTSQKLPKKA---AGATSGNKLTYQVKSGDSLWQIAQAHNVSVKQLTAWNHL 433
            D+   +L++ +    ++   A  T  N   Y V+SGD+L  IA    VS K L  WN L
Sbjct: 266 ADQLRESLASGEIAAVQSTLVADNTPLNSRVYTVRSGDTLSSIASRLGVSTKDLQQWNKL 325

Query: 434 SKDSKLQTGQKLTIVAPQEKLD-SEHIRTVSYKVKSGDSLAQIASKFKVTVAELLEWNSL 492
            + SKL+ GQ LTI A       + +  +++Y+V+ GDSL+ IA +  V + +++ WNS 
Sbjct: 326 -RGSKLKPGQSLTIGAGSSAQRLANNSDSITYRVRKGDSLSSIAKRHGVNIKDVMRWNSD 384

Query: 493 TPSQYILPGQVLKLVVDESNL 513
           T +  + PG  L L V  +N+
Sbjct: 385 TAN--LQPGDKLTLFVKNNNM 403