Pairwise Alignments

Query, 299 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 308 a.a., Transcriptional regulator, LysR family from Pseudomonas putida KT2440

 Score =  202 bits (515), Expect = 6e-57
 Identities = 117/294 (39%), Positives = 165/294 (56%), Gaps = 3/294 (1%)

Query: 1   MRITLRQLAVFEAVARSGQVAKAAEQVNLSPPATSMALAELEKQLNARLFERIGNRLQLN 60
           MR TLRQ+ VF AVA+   V++AA  + LS  A S ++ ELE+Q + +LF+R G RL LN
Sbjct: 1   MRFTLRQMQVFVAVAQHQSVSRAASLLALSQSAASTSITELERQSSCQLFDRAGKRLALN 60

Query: 61  SQGNLLLPLAADLLHRVEQIEQAFTPQGGDLVGQLSVSASSTIGNYLLAKAAVAFCQQHT 120
           + G+ LLP A  LL + ++IE     + G   G L+V A+ TIGNYL       + Q H 
Sbjct: 61  ALGHQLLPQAVALLDQAKEIEDLLNGKSG--FGSLAVGATLTIGNYLATLLIGNYMQTHP 118

Query: 121 QTHVEVAITNTQDVIQSVAQFRAEMGFIEGHCTDNRLHIEPWHKDRLLVFCHPAHPLAGQ 180
           ++ V++ + NT  ++Q VA +  ++G IEG C    L ++PW +D L+VFC P HPLA  
Sbjct: 119 ESQVKLHVQNTAHIVQQVAHYEIDLGLIEGDCNHPDLEVQPWVEDELVVFCAPQHPLAKL 178

Query: 181 TVKSF-AVKGQSWVLREEGSGTREYFVNAANELGMQPESKFCFTTPDAIKLAVKQGAGLG 239
                 ++  ++W+LRE+GSGTR  F  A          +      +AIK AV+ G G+G
Sbjct: 179 GRADIESLSQEAWILREQGSGTRLTFDQAMRHHRANLNIRLELEHTEAIKRAVESGLGIG 238

Query: 240 VLSELALEKEISRKELALVTIEGLVLERQFYRITHKSRQATSLGLAFVQFCSNF 293
            +S LAL     R  L  V    L L RQFY I HK +  TS    F++ C NF
Sbjct: 239 CISRLALRDAFRRGSLVPVETPELDLLRQFYFIWHKQKYQTSAMREFLELCRNF 292