Pairwise Alignments

Query, 242 a.a., DNA polymerase III, epsilon subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 203 a.a., Exonuclease from Pseudomonas putida KT2440

 Score = 61.6 bits (148), Expect = 1e-14
 Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 21/180 (11%)

Query: 9   RQVILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYYHQYINPGQAIDPEAIAV 68
           R  ++D ETTG++ G+G      R  E+  V +   R+  RY    +N G  +      +
Sbjct: 3   RIAVIDFETTGISPGTGC-----RATEVAVVMLEGGRIVERY-QSLMNAGVPVPAFVAGL 56

Query: 69  HGITDERVANEPRFHQIAQEFIDFISGAEIVAHNANFDVSFMDHEF-----SLLQPLGPK 123
            GIT   + + P   ++  E  +F+ G  ++AHNA FD  F D+E      S  QP    
Sbjct: 57  TGITTAMLRSAPPVEKVMNEVAEFVGGTPLLAHNAAFDQKFWDYELGRIGRSRSQPFA-- 114

Query: 124 TRDICEILDSLDIAKFLHPGQKNNLDALCKRYGIDNSRRHYHGALLDAEILADVYLSMTG 183
               C +L S    + L     + L  L +  G+ ++    H A+ DAE+ A++   + G
Sbjct: 115 ----CSLLLS---RRLLPAAPNHKLGTLTRWAGLPDTGT-AHRAMADAEMAANLLQYLAG 166