Pairwise Alignments

Query, 943 a.a., hypothetical TonB-dependent receptor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 930 a.a., TonB-dependent receptor from Sphingobium sp. HT1-2

 Score =  513 bits (1322), Expect = e-149
 Identities = 327/948 (34%), Positives = 488/948 (51%), Gaps = 80/948 (8%)

Query: 38  AMMLAGFSTNALAVGKLEGQIRDNSSQQPLAGATVTLKELNLSQQAGRDGRFFFVGVKDG 97
           A++LA     A   G + G + D +  + L    + + E     +AGRDG + F  V  G
Sbjct: 12  AIILATAMPVAALAGTISGTVSDGTGTRALQSTQLRIVENGRIAEAGRDGSYRFPDVAPG 71

Query: 98  DYTLVVNYLGAMTTEHKISIRDKQTTLQDISLNSQDDVEHIRVVGQQGALSKSMNRQRGA 157
            YT+   Y GA      + +        DI + S  D   I VVGQ    + +++RQR A
Sbjct: 72  TYTIEARYTGADPVRTTVVVPATGDVDADIRIGSNVDASII-VVGQVANQASTLSRQRAA 130

Query: 158 DNVLSVVSADVLGNFPDSNISESLQRVPGLSIERDQGEGRFVRVRGMAPDYNSVSMNGTR 217
           D V SV++ D +G FPD N++ES++R+PG++I  DQGEGRFV VRG+ P+ N+ S+NGTR
Sbjct: 131 DGVESVLTRDAIGQFPDQNVAESIRRLPGVNILNDQGEGRFVSVRGLDPELNAASINGTR 190

Query: 218 LPSPESDRRAVALDVVPSDLLQSVEVSKTLTPDMDADALGGAIEVKSLSAFDRDDTYLNL 277
           +P+PESD R+VALDV+PS+L++S+E+ K+LTPDMD D +G +IE+++ SAFDR     ++
Sbjct: 191 VPAPESDVRSVALDVIPSELIESIEIKKSLTPDMDGDTIGASIEIQTTSAFDRKKDLYSV 250

Query: 278 NTEASQDTLTDNINPKLAASYSDIIAENLGIAIATSWYNRDFGSDNVETGGDWAFAEDSG 337
             E S +   D + PK +  +S  I +  GIA   S+Y R F SDN+E   DW   +D  
Sbjct: 251 KLEGSYNDYADALTPKGSVDFSTRITDRFGIAGGFSYYKRKFESDNIE-AADWNQTDDG- 308

Query: 338 FDDAALASVDARDYEINRERLGVGVNFDYRPSDDTDLYLRTLYSEFDDTETRNSAKTKWK 397
              A    +  RDY++ R+RLG  ++ D+  +D T LY R LYS+F+D E R     +  
Sbjct: 309 --IAYAEELQYRDYDVQRKRLGGSLSLDWLATDTTKLYARGLYSQFEDQEYRGDIIFQMN 366

Query: 398 ---------SAQQADALSQGKTTRSLKSRTENQNITSFVLGGQTRFDRWTFDYQASHSSA 448
                    SAQ +D   + +  R +K R E Q I S  LGG+T    W   Y  S S A
Sbjct: 367 GEPESGDATSAQFSDEDDRIRVRRRMKDRFEKQRIKSLTLGGETNTGPWKLTYSGSWSEA 426

Query: 449 SAEKPRDIAGADFVAKIDNTG------FSNTQTPQIIA---PEDYYQNANFELDEIE-IA 498
           S  +   I    F A  +  G      +SN   P+       + +Y  +N+E DE+E   
Sbjct: 427 SERENGSIDPTRFQADFEENGVNVGFDYSNPMKPRYTVTGNTDAFYDASNYEFDELERTT 486

Query: 499 ASKAEDTINAVNVDLTRQLTLGDYSAEVKTGVKVSRRDKSNREDIWIYSDL-GDQGVSD- 556
            S ++D    +  D++R       +  V+TG+K   R KS      +Y    GD  ++D 
Sbjct: 487 LSDSKDREYTIKGDISRAFATDGGTFTVQTGMKARWRKKSYNLQSDVYDGYDGDYTLADV 546

Query: 557 ---------DALLLSQYAG-------NELDYSLGRFGTGIDSTPVWELVNSLDADDNRDE 600
                    D L L  + G       N+ ++ L  F T         L+N          
Sbjct: 547 LGGQTYRIQDILPLPSHTGPSNFFYDNQANFELNEFDT---------LLN---------- 587

Query: 601 VESTINDFDITEDINAAYLMGHMDIGKLRILTGLRVEQNQWDSTGSGYDGAKDEFIDINH 660
             ST +D+ +TEDI A+YLMG  D   LR++ G+R+EQ + D          DE  DI  
Sbjct: 588 --STTSDYSVTEDILASYLMGRWDSDTLRVIAGVRMEQTRNDIRAFQTLATGDEVEDITI 645

Query: 661 S-----SDEDHWLPALHLTYRYTDNTVLRAAWTNTLVRPTFGQLAPGYLLEEDDGDIDLT 715
           +      +  +WLP+L + Y    N V R     +LVRP    LAP + + ED    + T
Sbjct: 646 TPTRFVRNYTNWLPSLTIRYEPVTNLVFRFGGYKSLVRPKLSNLAPRFDINEDG---EAT 702

Query: 716 FGNPQLKSLESMNVDLSLEHYFGNIGLISAGLFYKDIENFIYQADLAGLGDY--VDAHSA 773
            GNP LK   + N+D S E YFG    ++ G F+K I++F+ +  +   G    VD +  
Sbjct: 703 LGNPNLKPYSAWNIDASAEWYFGTNAALTGGFFWKSIKDFVVEQTIEEAGTIYGVDYNQL 762

Query: 774 VTFVNGDSADIYGLELSYVQEFHFLPEPFNALVLNSNLTYTDSSANISWIEDGQLLS-RD 832
            T++NGD+A I G ELSY Q F FLP PF+ L+LN+N TYTD+   +  + DG +   R 
Sbjct: 763 TTYINGDTAKIKGFELSYSQVFSFLPAPFDGLLLNANYTYTDAKGTV--LTDGDIADPRK 820

Query: 833 IPMPSQSDLTANLSLGYENSYASVWLSAAYKSEYLQEVTELSDERLDLYQDNHLQWDFVA 892
           +P+ + S  T N+ LGYE    S+  +  Y+ +YL E+   +++  D Y D+H Q D  A
Sbjct: 821 VPLAASSKNTFNIVLGYEKGPISLRAAGTYRDKYLDELGGKAED--DRYVDDHFQLDLSA 878

Query: 893 KAHLTSNVTLYFKGVNLTDEPYYSYTGNSAYN--AQYEAYGRTFQLGL 938
           K  +   V ++ + +N T+EPY++Y   +      QYE Y  T + G+
Sbjct: 879 KYRVAPGVRVFAEWINATNEPYFAYQNYAGAKRLLQYEEYNWTAKFGV 926