Pairwise Alignments

Query, 673 a.a., excinuclease ABC, B subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

 Score = 73.6 bits (179), Expect = 5e-17
 Identities = 76/303 (25%), Positives = 127/303 (41%), Gaps = 45/303 (14%)

Query: 36  QTLLGVTGSGKTFTIANVIAKLGRPTIIMAPNKTLAAQLYGEMKEFFPNNAVEYFVSY-- 93
           QT   + G+  +  IA   +  GR T+++  +   A +L  E++ F P+  V  F  +  
Sbjct: 16  QTWGNLPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDLPVLPFPDWET 75

Query: 94  --YDYYQPEAYVPASNTFIEKDASVNAHIEQMRLSATKALLERKDVVLIASVS-AIYGLG 150
             YD + P                 +  I   R+++   L E    +L+  ++ A++ L 
Sbjct: 76  LPYDLFSP-----------------HQDIISQRIASLYRLPELSHGILVVPITTALHRLA 118

Query: 151 DPDSYLKMLLHLRQGDTMGQRDILKRLSELQYTRNDIELQRGTFRVRGEVIDIFPADSDR 210
                L   L L  G T+    +  RL    Y   D   + G F VRG +ID+FP  S +
Sbjct: 119 PTRFLLGSSLVLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGS-K 177

Query: 211 YAIRVELFDDEIERLSEFDPLTGQIVKRIARTTVYPKTHYVTPREKILEATELIKQELRE 270
              R++LFD+EIE L  FDP T + + ++    + P       RE  ++  E+ + + R 
Sbjct: 178 LPYRIDLFDNEIETLRTFDPETQRSIDKVDSVRLLP------AREFPMQKEEVTRFKARF 231

Query: 271 RKQYLLDNNKLIEAQRIHERVQYDIEMMVELGYCSGIENYSRYLSGRAPGEGPPTLLDYL 330
           R+++ +D  +    Q +   +             +GIE Y          E   TL DYL
Sbjct: 232 RERFDVDFRRSAIFQDLASGI-----------IPAGIEYYLPLFF-----EETSTLFDYL 275

Query: 331 PAD 333
           P D
Sbjct: 276 PTD 278



 Score = 44.7 bits (104), Expect = 2e-08
 Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 35/160 (21%)

Query: 441 AKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDTVER-----VEIIRDLRL 495
           A+R++V   V+    +      L E L   G +V YLH+D+ T+E+      E++ + R+
Sbjct: 783 ARRLSVRTFVMEQNKSTVKEALLRELL--RGGQVYYLHNDVKTIEKCAADLAELVPEARI 840

Query: 496 G---------------------KFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSER 534
           G                     +F+VLV   ++  G+D+P  + + I  ADK G  +   
Sbjct: 841 GIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQ--- 897

Query: 535 SLIQTIGRAARNVNGKVILYADRITNSMAKAIGETERRRE 574
            L Q  GR  R+ +     YA  +T +  K   + E+R E
Sbjct: 898 -LHQLRGRVGRSHHQ---AYAYLLTPTRQKVSADAEKRLE 933