Pairwise Alignments

Query, 775 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 957 a.a., diguanylate cyclase from Pseudomonas simiae WCS417

 Score =  268 bits (684), Expect = 1e-75
 Identities = 188/534 (35%), Positives = 273/534 (51%), Gaps = 23/534 (4%)

Query: 247 KVEYVNQAHEDITGIARDKSIGTNLRDLTFFRQHNALAEQTLAKIFRGDQAKGEVQFSRT 306
           K+  VNQA   +TG   D  IG N+ +L   R            +      +GE+  +R 
Sbjct: 424 KLIAVNQAFSRVTGFETDDMIGRNVVELPSSRDARRHFPVIRQALLSHGTWQGELVETRK 483

Query: 307 DGSRY--WLKYIVSQFITDRGNH----YALVSGEENSDEHNYKAELERLAWRCGLTGLNN 360
           +G  Y  WL+  V + +  + +H    +A +S    S+E      +  L     LTGL N
Sbjct: 484 NGELYPQWLQLNVVRDVRGKVSHIVGFFADLSARRESEER-----MRYLTHYDELTGLAN 538

Query: 361 RSHFNRVL----ERTTHG----LLLLVDLVAFKRFNDTYGHENGDSLLIEVGRRLKHFSE 412
           RS F   L    +R   G     LL ++L  FK  ND+ GHE  D LL ++ RRL   + 
Sbjct: 539 RSLFRERLREAHQRVRQGGRNLALLHINLDRFKLLNDSLGHEVADQLLQKMARRL--INA 596

Query: 413 INKATEIARVGSDEFAVLLTDDNAVYDLDYFSTRLYQHLAMPILIGREQVEPKPALAVVD 472
           + +A  IAR+  DEFAVL      +  L   +TRL   L +P+ +   ++    ++ V  
Sbjct: 597 LPEADTIARLSGDEFAVLFDAYGNLSSLARVATRLLAKLRVPVTVEGHELVVSASMGVSL 656

Query: 473 IASVANLFAPLTC-ADIAVQYAKKKKGTAIQVFNSTLLSAFKEDAQIERDLHSAIRGRQF 531
           +   A   + L   +++A+Q+AK   G   Q +  +L ++  E  Q+E  L  AI   Q 
Sbjct: 657 LPDNAREISALVSQSNMAMQHAKHLGGNNFQFYTDSLQASTLERLQLENHLRKAIEEGQL 716

Query: 532 ELYYQPLRDLEQQTYIGAEALIRWHHPKKGVLYPGAFIDIAEQSGMINAIGSWVLEAACR 591
            ++YQP   L       AEALIRW HP+ G++ PG FI +AE++G+I  +G +VL  AC 
Sbjct: 717 TVFYQPKLCLATGKLNAAEALIRWEHPQWGMVPPGDFIGLAEETGLIVPLGEFVLREACW 776

Query: 592 QLNIWQHHN-ADLSMHVNVSARQFFSGNLYEQVWQLLTRYRLKPKTLILEITETELMGDI 650
           Q   WQ    A + + VN+S  Q   G L   V Q+L    L P+ L LE+TE++L+  +
Sbjct: 777 QACEWQRQGLAPIRVSVNLSVHQLRQGKLVSLVRQVLEETGLDPQYLELELTESQLLDSV 836

Query: 651 RHATLLCQELAELGVGLAIDDFGTGYSSMRYLKQFPISKLKIDRSFISDLTISRESQEIV 710
            H     Q+L +LGV LAIDDFGTGYSS+ YLK+ P+  +KID++FI  L   RE   I 
Sbjct: 837 EHIIATFQQLRDLGVKLAIDDFGTGYSSLSYLKRIPVDYVKIDQTFIRGLGQGREDAAIT 896

Query: 711 SAIIAMANALNISLTAEGVETAEQEAFLAKSLCHQAQGFLYSPALREPEFAQFL 764
            AIIAMA+ L + + AEGVE  +Q  FL    C + QG+L S  +     A  L
Sbjct: 897 RAIIAMAHGLALKVVAEGVEDQQQLDFLRGERCDEVQGYLISRPMEAKGLADLL 950