Pairwise Alignments

Query, 775 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 897 a.a., diguanylate cyclase from Pseudomonas simiae WCS417

 Score =  339 bits (870), Expect = 3e-97
 Identities = 238/733 (32%), Positives = 360/733 (49%), Gaps = 37/733 (5%)

Query: 52  RQHQHLLESLVHSTAKQQGDFTKTAELATELLCQNLAVSLVSIWIFSADQGTQSLVAQFG 111
           R  Q L+  L            + AEL T   C    +   SIW     +G + +     
Sbjct: 173 RAQQELILLLARQRYTTPNSLQEAAELITRSACDIYQIDCASIWNL---EGQRLVPISAY 229

Query: 112 SMALQDTYRPSLLHT--VPRYLNELKNYRHIDAGNTLIDPRLTELVDSYFIPRQILSSLD 169
             A    + P  +     P YL  L + R IDA N + DPR  E+ DS    + I + LD
Sbjct: 230 HRADGQHHLPESIDASCFPDYLEALHSSRAIDATNAMRDPRTREMADS-LRDKDIHAMLD 288

Query: 170 VGIRINGHLEGVLCIERAQVTHHWHDSEIHLACQMADQLALTLATKHAYDKEERLSLFRC 229
             IR++GH+ GVLC+E++  T  W   EI  A ++ADQ A  +   +       L LF+ 
Sbjct: 289 ASIRVDGHVVGVLCLEQSGSTRAWQADEIAFAGELADQFAQVINNHNRRTATSALHLFQR 348

Query: 230 AIEQSRQMSMLINLHTEKVEYVNQAHEDITGIARDKSIGTNLRDLTFFRQHNALAEQTLA 289
           A+EQS    +L+N     VEYVN +   IT  + ++  G  L  L      + L     +
Sbjct: 349 AVEQSANAFLLVNCDGV-VEYVNPSFTAITQYSAEEVHGHRLAQLPALENLSELLFDAPS 407

Query: 290 KIFRGDQAKGEVQFSRTDGSRYWLKYIVSQFITDRGN--HYALVSGEENSDEHNYKAELE 347
            + + +  +GE +  R +   YW +  +S+   D     HY  +  E+ +     +  +E
Sbjct: 408 SLAKSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIY-EDITQTKLAQQRIE 466

Query: 348 RLAWRCGLTGLNNRSHFNRVLERT------THGLLLLVDLVAFKRFNDTYGHENGDSLLI 401
           RLA+   LT L NR  F R L+        +   LLLVD+  FKR ND+ GH+ GD LLI
Sbjct: 467 RLAYTDNLTNLGNRPAFIRNLDERFARDSDSPISLLLVDIDNFKRINDSLGHQTGDKLLI 526

Query: 402 EVGRRLKHFSEINKATEIARVGSDEFAVLLTDDNAVYDLDYFSTRLYQHLAMPILIGREQ 461
            + RRL++   ++    +AR  S+EFAVLL DD  +      +++L   L  P+ +  + 
Sbjct: 527 SLARRLRN--SLSTGGSLARFASNEFAVLL-DDTDLESGQQVASQLLATLDKPMFVDNQL 583

Query: 462 VEPKPALAVVDIASVANLFAPLTCAD---------IAVQYAKKKKGTAIQVFNSTLLSAF 512
           +            SV    APL   D         +A+  AK      +QVF   L +  
Sbjct: 584 ISVT--------GSVGLACAPLHGRDPQTLMRNAGLALHKAKANGKHQVQVFTEALNAEA 635

Query: 513 KEDAQIERDLHSAIRGRQFELYYQPLRDLEQQTYIGAEALIRWHHPKKGVLYPGAFIDIA 572
                +E +L  A+   + +++YQP   L     +G EAL+RW+HP+KG++ P  FI +A
Sbjct: 636 SYKLFVENNLRRALTQNELDVFYQPKLCLRSGRLLGMEALLRWNHPEKGMIRPDQFISVA 695

Query: 573 EQSGMINAIGSWVLEAACRQLN-IWQHHNADLSMHVNVSARQFFSGNLYEQVWQLLTRYR 631
           E++G+I  IG W+   ACR    +      +L + +N+S +QF   +L   +  +L   +
Sbjct: 696 EETGLIIPIGKWIARQACRMSKQLSASGMGNLQVAINLSPKQFSDPDLVASIASILKEEQ 755

Query: 632 LKPKTLILEITETELMGDIRHATLLCQELAELGVGLAIDDFGTGYSSMRYLKQFPISKLK 691
           L    L LE+TE  L+       L   +L  LG+ LA+DDFGTGYSS+ YLK+FPI  +K
Sbjct: 756 LPANLLELELTEGLLLEATEDTRLQLDQLKSLGLTLAMDDFGTGYSSLSYLKKFPIDIIK 815

Query: 692 IDRSFISDLTISRESQEIVSAIIAMANALNISLTAEGVETAEQEAFLAKSLCHQAQGFLY 751
           IDRSFI ++  +++  EI SA+IAMA+ L + + AEG+ETAEQ AFL +  C   QG+L+
Sbjct: 816 IDRSFIHEIPDNQDDMEITSAVIAMAHNLKLKVVAEGIETAEQLAFLRRHRCDVGQGYLF 875

Query: 752 SPALREPEFAQFL 764
              +   E    L
Sbjct: 876 DRPIPGAELLAML 888