Pairwise Alignments

Query, 775 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440

 Score =  265 bits (676), Expect = 1e-74
 Identities = 187/562 (33%), Positives = 284/562 (50%), Gaps = 27/562 (4%)

Query: 227  FRCAIEQSRQMSMLINLHTEKVEYVNQAHEDITGIARDKSIGTNLRDLTFF---RQHNAL 283
            F  A   S     +   H+ +   VN     +TG + D+ IG  + ++  +   +Q +AL
Sbjct: 539  FAKAFHSSPDAITITERHSGRYLEVNDGFCRLTGYSTDEVIGHTVYEIGIWADDKQRSAL 598

Query: 284  AEQTLAKIFRGDQAKGEVQFSRTDGSRYWLKYIVSQFITDRGNHYALVSGEENSDEHNYK 343
                LA++    +        R          +  + IT       L++  + S   N +
Sbjct: 599  ----LAELRERGRVHHREMLGRNKRGDILTVEVSVEPITLNEVDCLLLTARDVSQLKNAQ 654

Query: 344  AELERLAWRCGLTGLNNR-------SHFNRVLER-TTHGLLLLVDLVAFKRFNDTYGHEN 395
            A++  LA+   LT L NR       S    +L+R    G LL +DL  FK  ND+ GH  
Sbjct: 655  AQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPV 714

Query: 396  GDSLLIEVGRRLKHFSEINKATEIARVGSDEFAVLLTD-----DNAVYDLDYFSTRLYQH 450
            GD++L  +  RL+  + +     +AR+G DEF VLL+      ++    +   +  L + 
Sbjct: 715  GDTVLKIITARLE--ASVRLEDTVARLGGDEFVVLLSGLEGSREHVEEKVRELADTLREL 772

Query: 451  LAMPILIGREQVEPKPALAVVDIASVANLFAPLTC-ADIAVQYAKKKKGTAIQVFNSTLL 509
            LA P+ +  ++++  P++ V  I       A L   ADIA+  AK       Q+F++T+ 
Sbjct: 773  LAEPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKRADIALYRAKDSGRNTTQLFHTTMQ 832

Query: 510  SAFKEDAQIERDLHSAIRGRQFELYYQPLRDLEQQTYIGAEALIRWHHPKKGVLYPGAFI 569
             A  E  ++E DL  A+   +  L++QP  D      +GAE L+RWHHP+ G   P  FI
Sbjct: 833  KAASERLRMENDLRLALARGELALHFQPQVDARDNRIVGAEVLLRWHHPQLGQQPPSQFI 892

Query: 570  DIAEQSGMINAIGSWVLEAAC----RQLNIWQHHNADLSMHVNVSARQFFSGNLYEQVWQ 625
             + E+SG+I  +GSW+L+ AC    R L        D ++ VN+S RQF   +   +V +
Sbjct: 893  QVLEESGLILEVGSWILDEACDACARMLTDGLIDADDFNLCVNISPRQFRQNDFVGRVLR 952

Query: 626  LLTRYRLKPKTLILEITETELMGDIRHATLLCQELAELGVGLAIDDFGTGYSSMRYLKQF 685
             L  YRL  + L LEITE  ++ ++        EL   GV  A+DDFGTGYSS+ YLK+ 
Sbjct: 953  SLDDYRLPRQMLTLEITEGIVIQNLEDTISKMCELKRYGVSFAMDDFGTGYSSLTYLKRL 1012

Query: 686  PISKLKIDRSFISDLTISRESQEIVSAIIAMANALNISLTAEGVETAEQEAFLAKSLCHQ 745
            P+  LKID+SF+ D  +     EIV AI+AMA +L++++ AEGVE  EQ AFL +  CH 
Sbjct: 1013 PVDALKIDQSFVRDAPVDPNDAEIVRAIVAMARSLDLAVIAEGVELTEQLAFLERLGCHL 1072

Query: 746  AQGFLYSPALREPEFAQFLLTA 767
             QG+L+S  L  PEF Q LL A
Sbjct: 1073 YQGYLHSRPLPLPEFRQMLLEA 1094