Pairwise Alignments

Query, 775 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1276 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  262 bits (669), Expect = 1e-73
 Identities = 177/542 (32%), Positives = 280/542 (51%), Gaps = 25/542 (4%)

Query: 243  LHTEKVEYVNQAHED---ITGIARDKSIGTNLRDLTFFRQHNALAEQTLAKIFRGDQAKG 299
            L T+   Y+ QA+E    ++G A  + +      LT   Q        + ++ +    +G
Sbjct: 730  LITDPAGYIVQANEAFSRVSGYAVSEVLDQLPGMLTVDEQQEGHLRYVVKQLHQRGSWEG 789

Query: 300  EVQFSRTDGSRYWLKYIVSQFITDRGNHYALVSGEENSDEHNYKAE-LERLAWRCGLTGL 358
            EV   R DG  Y     ++  + D G+  + V    +  E     + + RLA+   LT L
Sbjct: 790  EVWLKRRDGDHYPAWVGITAVLDDEGDLASYVCFFTDISERKASEQRIHRLAYYDALTHL 849

Query: 359  NNRSHFNRVLERTTHG--------LLLLVDLVAFKRFNDTYGHENGDSLLIEVGRRLKHF 410
             NR+ F   L              +L+ +DL  FK  ND+ GH  GD +L ++  RL   
Sbjct: 850  PNRTLFQDRLYNALQQAERQKAWVVLMFLDLDRFKPINDSLGHAAGDRMLKDMALRL--L 907

Query: 411  SEINKATEIARVGSDEFAVLL----TDDNAVYDLDYFSTRLYQHLAMPILIGREQVEPKP 466
            + ++    +AR+G DEF +LL    T + A+    + +  +   L  P ++   +     
Sbjct: 908  ACVDDDDTVARMGGDEFTLLLQPRPTREMALNRAIHVAENILGSLVRPFVLENREFFVTA 967

Query: 467  ALAV-VDIASVANLFAPLTCADIAVQYAKKKKGTAIQVFNSTLLSAFKEDAQIERDLHSA 525
            ++ + +     + L   +  AD A+ +AK++     Q + + + ++  E  ++E DL  A
Sbjct: 968  SIGIALSPQDGSELSQLMKNADTAMYHAKERGKNNFQFYQAEMNASALERLELESDLRHA 1027

Query: 526  IRGRQFELYYQPLRDLEQQTYIGAEALIRWHHPKKGVLYPGAFIDIAEQSGMINAIGSWV 585
            +   +F LYYQP    + +   GAEAL+RW HP +G++ PG FI + E+ G++  +G WV
Sbjct: 1028 MEQNEFILYYQPQFSGDGKRLTGAEALLRWRHPTRGLVPPGDFIPVIEELGLVVDVGDWV 1087

Query: 586  LEAACRQLNIWQHHNADL---SMHVNVSARQFFSGNLYEQVWQLLTRYRLKPKTLILEIT 642
            L  A RQL  W  H A +    + VN+SARQF  G L  ++  +L    L P  L LE+T
Sbjct: 1088 LREASRQLKAW--HKAKVRVPKVSVNISARQFSDGQLGTRIANILEESGLPPACLELELT 1145

Query: 643  ETELMGDIRHATLLCQELAELGVGLAIDDFGTGYSSMRYLKQFPISKLKIDRSFISDLTI 702
            E+ LM ++  A  +   L  LG+ +A+DDFGTGYSS+ YLKQFPI  LKIDR+F+  L  
Sbjct: 1146 ESILMREVNEALQILASLKNLGLSIAVDDFGTGYSSLNYLKQFPIDVLKIDRTFVDGLPE 1205

Query: 703  SRESQEIVSAIIAMANALNISLTAEGVETAEQEAFLAKSLCHQAQGFLYSPALREPEF-A 761
              +  +I  AIIAMA++LN+++ AEGVET EQ  FL +  C + QG+L+   +   +F A
Sbjct: 1206 GEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEFLREHGCDEVQGYLFGRPMPAHQFEA 1265

Query: 762  QF 763
            QF
Sbjct: 1266 QF 1267