Pairwise Alignments

Query, 775 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 896 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  340 bits (871), Expect = 3e-97
 Identities = 238/731 (32%), Positives = 370/731 (50%), Gaps = 34/731 (4%)

Query: 52  RQHQHLLESLVHSTAKQQGDFTKTAELATELLCQNLAVSLVSIWIFSADQGTQSLVAQFG 111
           R  Q L+  L            + A+L T+  C+   V   SIW    DQ  + ++A + 
Sbjct: 173 RGQQDLILRLARHRYSAGNSLLEAAQLITQSACEIYKVDCASIWHLE-DQRLEPIIAWYR 231

Query: 112 SMALQDTYRPSLLHT--VPRYLNELKNYRHIDAGNTLIDPRLTELVDSYFIPRQILSSLD 169
               Q+  +P  +     P YL+ L   R IDA N   DPR   L  S     + +  LD
Sbjct: 232 DA--QEHRQPEAIDASRFPDYLDALHASRAIDAHNAGHDPRTRALAQSMRPENKAM--LD 287

Query: 170 VGIRINGHLEGVLCIERAQVTHHWHDSEIHLACQMADQLALTLATKHAYDKEERLSLFRC 229
             IR++G + GVLC+E++     W   EI  A ++ADQ A  +           L LF+ 
Sbjct: 288 ASIRVDGQVIGVLCLEQSGQPRAWQSDEIAFAGELADQFAQVITNHKRRAAASALHLFQR 347

Query: 230 AIEQSRQMSMLINLHTEKVEYVNQAHEDITGIARDKSIGTNLRDLTFFRQHNALAEQTLA 289
           A+EQS    +L+N    +VEYVN +   IT  + D+  G  L +L      + L   + +
Sbjct: 348 AVEQSASAFLLVN-RDGRVEYVNPSFTAITQYSTDEVQGRQLGELPALENLSELLFDSPS 406

Query: 290 KIFRGDQAKGEVQFSRTDGSRYWLKYIVSQFITDRGN--HYALVSGEENSDEHNYKAELE 347
            +  G+  +GE +  R +   YW +  +S+   D     HY  +  E+ +     +  +E
Sbjct: 407 SLAMGNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIY-EDVTQTKLAQQRIE 465

Query: 348 RLAWRCGLTGLNNRSHFNRVLERT------THGLLLLVDLVAFKRFNDTYGHENGDSLLI 401
           RLA+   LT L NR  F R L+        +   LLLVD+  FKR ND+ GH+ GD LLI
Sbjct: 466 RLAYTDNLTNLGNRPAFIRSLDERFARDGESSMCLLLVDIDNFKRINDSLGHQTGDKLLI 525

Query: 402 EVGRRLKHFSEINKATEIARVGSDEFAVLLTDDNAVYDLDYFSTRLYQHLAMPILIGREQ 461
            + RRL++   ++    +AR  S+EFAVLL DD ++ D    + +L   L  P+ +  + 
Sbjct: 526 SLARRLRN--SLHSGGILARFASNEFAVLL-DDTSLEDGQGVAQQLLCTLDKPMFVDNQL 582

Query: 462 VEPKPALAV-------VDIASVANLFAPLTCADIAVQYAKKKKGTAIQVFNSTLLSAFKE 514
           +    ++ +       VD AS+      +  A +A+  AK      +QVF   L +    
Sbjct: 583 INVTASVGLACAPLHGVDPASL------MKNAGLALHKAKANGKHQVQVFTEVLNAEASY 636

Query: 515 DAQIERDLHSAIRGRQFELYYQPLRDLEQQTYIGAEALIRWHHPKKGVLYPGAFIDIAEQ 574
              +E +L  A+   + +++YQP   L     +G EAL+RW+HP++G++ P  FI +AE+
Sbjct: 637 KLFVENNLRRALTQNELDVFYQPKLCLRSGRLLGLEALLRWNHPERGMIRPDQFISVAEE 696

Query: 575 SGMINAIGSWVL-EAACRQLNIWQHHNADLSMHVNVSARQFFSGNLYEQVWQLLTRYRLK 633
           +G+I  IG WV+ +A C    + +    +L + +N+S +QF   +L   +  +L    L 
Sbjct: 697 TGLIIPIGKWVVRQACCMSQQLRKAGLGNLHVAINLSPKQFSDPDLVASISTILKEEALP 756

Query: 634 PKTLILEITETELMGDIRHATLLCQELAELGVGLAIDDFGTGYSSMRYLKQFPISKLKID 693
           P  L LE+TE  L+           EL  LG+ LA+DDFGTGYSS+ YLK+FPI  LKID
Sbjct: 757 PHLLELELTEGLLLEASEDTHRQLDELKALGLTLAMDDFGTGYSSLSYLKKFPIDILKID 816

Query: 694 RSFISDLTISRESQEIVSAIIAMANALNISLTAEGVETAEQEAFLAKSLCHQAQGFLYSP 753
           RSFI+++  +++  EI SA++AMA+ L + + AEG+ET EQ AFL +  C   QG+L+  
Sbjct: 817 RSFINEIPDNQDDMEITSAVVAMAHNLKLKVVAEGIETPEQLAFLRRHRCDVGQGYLFDR 876

Query: 754 ALREPEFAQFL 764
            +   E A+ L
Sbjct: 877 PIPGRELAERL 887