Pairwise Alignments

Query, 775 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 631 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  258 bits (660), Expect = 5e-73
 Identities = 182/547 (33%), Positives = 273/547 (49%), Gaps = 20/547 (3%)

Query: 219 DKEERLSLFRCAIEQSRQMSMLINLHTEKVEYVNQAHEDITGIARDKSIGTNLRDLTFFR 278
           +  ERL +   A+  S    +L+      + +VN+A   ITG  +D+ IG   R   F  
Sbjct: 79  EDRERLRM-AAAVFDSTLEGVLVTDRQGLIVHVNRAFMRITGYQQDEVIGQ--RPSKFKS 135

Query: 279 QHNALA--EQTLAKIFRGDQAKGEVQFSRTDGSRYWLKYIVSQFITDRG--NHYALVSGE 334
            H+ LA  ++  A +    +  GE+   R  G  Y     +     D G  +HY  V  +
Sbjct: 136 GHHGLAFYQEVFATLAEKGEWSGEIWNRRKSGEIYPQWQTICAIRDDEGELSHYVAVFSD 195

Query: 335 ENSDEHNYKAELERLAWRCGLTGLNNRSHFNRVLERTTHGL--------LLLVDLVAFKR 386
            ++ +H+ + EL  LA    LTGL NR  F   LE+             LLL+DL  F+ 
Sbjct: 196 ISAIKHS-EQELAYLAHHDPLTGLPNRLLFTDRLEQALAAAQANKRGCALLLLDLDHFQS 254

Query: 387 FNDTYGHENGDSLLIEVGRRLKHFSEINKATEIARVGSDEFAVLLTDDNAVYDLDYFSTR 446
            ND  GH  GD LL  VG RL     +     +AR+G DEF VL+ +   V      +  
Sbjct: 255 INDGLGHTIGDQLLKLVGERLGEV--LGNGVTLARLGGDEFGVLVENCQQVGQAGKLAQC 312

Query: 447 LYQHLAMPILIGREQVEPKPALAVVDIASVA-NLFAPLTCADIAVQYAKKKKGTAIQVFN 505
           + + +  P      ++    ++ +    S A      L  AD A+  AK        ++ 
Sbjct: 313 IIERMREPFQFDGNRLFISASVGISLYPSDALGAEQLLRNADSALYKAKSNGRACYALYT 372

Query: 506 STLLSAFKEDAQIERDLHSAIRGRQFELYYQPLRDLEQQTYIGAEALIRWHHPKKGVLYP 565
             L +  +   +   +L  A+   +  +Y+QP+ DL     +G E L+RW HP++G++ P
Sbjct: 373 EELTAHAQHRVETAAELRRALEQDELRVYFQPVHDLASGRQVGVETLVRWQHPRRGLVPP 432

Query: 566 GAFIDIAEQSGMINAIGSWVLEAACRQLNIWQHHNADLS-MHVNVSARQFFSGNLYEQVW 624
           G FI IAE++G+I  I +WVL  ACRQ+  WQ     L+ + VN+S+R F    LY QV 
Sbjct: 433 GEFIPIAERTGLIAEIDTWVLRQACRQMVQWQAQGRQLAFVGVNISSRLFGQHELYRQVA 492

Query: 625 QLLTRYRLKPKTLILEITETELMGDIRHATLLCQELAELGVGLAIDDFGTGYSSMRYLKQ 684
           ++L    L P  L LE+TE+ +M D   A      L ELGV LAIDDFGTGYSS+  LK+
Sbjct: 493 EVLHDTGLAPALLELEVTESAVMEDPEVALEQLHRLRELGVTLAIDDFGTGYSSLLRLKR 552

Query: 685 FPISKLKIDRSFISDLTISRESQEIVSAIIAMANALNISLTAEGVETAEQEAFLAKSLCH 744
            P+ KLKID+ F++ L +  +   IV  IIA+A ++ + + AEG+E AEQ +FL +  C 
Sbjct: 553 LPVQKLKIDQGFVAGLPVDEDDIAIVRVIIALARSMGMQVHAEGIEQAEQASFLLQEECQ 612

Query: 745 QAQGFLY 751
             QG+ +
Sbjct: 613 LGQGYWF 619