Pairwise Alignments

Query, 891 a.a., hypothetical TonB-dependent receptor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 962 a.a., Outer membrane cobalamin receptor protein from Kangiella aquimarina DSM 16071

 Score =  222 bits (565), Expect = 1e-61
 Identities = 251/979 (25%), Positives = 405/979 (41%), Gaps = 168/979 (17%)

Query: 34  AVDANKVERIAVTGSRIQRTDMETSSPVTVISRAEIDASGTATVSDFVRNL--------- 84
           A +  + E I VTGSRI++   E ++PVTV+ R  ++ +G  +V D +  L         
Sbjct: 31  AAEEEEAESIVVTGSRIRQAQAEGANPVTVLGRDYLENTGAKSVGDILARLPTAGSALNT 90

Query: 85  ---SQNSFGSFREASGFGSGQSSQSTVSMRGLGSQRTLVLIDGRRM--GSSVAFGGGTQN 139
              S  +FG   +  G G+G +    VS+R L ++RTLVL+DG R   GSS +    + +
Sbjct: 91  RFNSSGNFGFPPDGGGVGAGAAQ---VSLRHLKAKRTLVLVDGIRWVNGSSGSGVSNSVD 147

Query: 140 LNVVPMAAIERIEVLRDGASAVYGSDAVAGVINIITKKEFEGVEFDADLGATQHGGAEKS 199
           LN +P++ I+RIE+L DGAS++YGSDA+AGV+NIIT+K+FEG+EF+A  G    G  E S
Sbjct: 148 LNTIPISIIDRIEILEDGASSIYGSDAIAGVVNIITRKDFEGMEFNAYHGMFDEGDGETS 207

Query: 200 NARFTFGVNSEKTNMVASVEYYNRAALYDADRDYSDTLYSAHGWPGTGSYVDKTKPILDA 259
                FG + +K  +  S+ ++++ A+   +R+      SA   P TG           +
Sbjct: 208 QFDLAFGASGDKHRVFFSLSHFDQEAVDSLERE-----LSAVPVPNTGL-------TRGS 255

Query: 260 DGKPTGKYQTVSFADK-RCGEGNSLVTG--------PDG--------NQTCSYNAAAESA 302
            G P G++  +   D+      N+ VTG        P G             +N AA + 
Sbjct: 256 SGTPQGRFVFIDPNDQVNDLTINNGVTGIPTYDLSNPGGPNDDFHVFTNNDRFNFAAYNL 315

Query: 303 TMAAQERFSTFVKVDHELTEDINWTNRLMMSRVWTEGQYAAAPNSYSPKLRWTKENSDIY 362
            +   +R S F + D++L++++N+  + + +   +  + A  P    P          + 
Sbjct: 316 YVTPSKRTSIFGQADYQLSDNVNFYTKALFNNRESVNRAAPEPLFLGPDAGTGGLADTVS 375

Query: 363 LATVNKYGNDYLKNQLKYDAKGNLIGGDTINLKMRTTPLGPRV--TNVEDTDINFLTALE 420
           +   N Y      N   +    N    + I +  R    GPRV   NV+   + F   L 
Sbjct: 376 IHETNPY------NPFGFTLDEN----NLIFIGRRPLEGGPRVFKQNVDTVYVGF--GLN 423

Query: 421 GHSDILGGT---AWNLGAQWIRSDVTTIQTGLANANMIQEFLDNGKLDYFAAGTGYVEGS 477
           G  D   G     W++     +++      G  N   I+  L  G L    A    +EG 
Sbjct: 424 G--DFAAGNNSYFWDINYTHGKNEAKQTTYGSYNIRHIKNAL--GPL----ADCQALEGC 475

Query: 478 NELQL--QEAAHTGIFTGRVQTY--------------GIDGGASFDLFELPAGTVPLAIG 521
             L +   +   +G  T  +  Y               +    S DLFE+PAG    A G
Sbjct: 476 VPLNIFGGQGDGSGTITQEMLDYIQPVMTDQSENVIDTLSANISGDLFEMPAGYFAFAAG 535

Query: 522 FEFMRTEYDKTNDAGSNLGNIIGTSGGDNIQGKSREVLSFSAETMFPII------DGLDL 575
            E          DA    GN  G          S +V  + AE   P++      + L L
Sbjct: 536 VETREYSGFYQPDAIVVAGNSNGVPSTPT--SGSYDVDEYYAEFKVPLLKDMAAAEELTL 593

Query: 576 ELSARFDDYSDFGSTFNPKVGLSYRPVDSLLVRASYGTGFRAPTFDDLYATAS------- 628
            ++AR  DYS FGS    K GL +R  D L++RAS   GFRAP+  +L+ + S       
Sbjct: 594 TMAARNSDYSTFGSETTTKFGLLWRVTDELVLRASQSEGFRAPSIGELFVSDSRFDEPLT 653

Query: 629 ---ETYLWARDWTQCP--GNPNGC--VQEQFKAQYQGNDDLEPEESTSLSLGLVWNVT-- 679
                YL  +    C   G P+    + +Q      GN DL+ E+S S   G V++    
Sbjct: 654 DRCSNYLGTQYEFNCQTLGVPDTYQQINQQVSVITGGNPDLDAEKSDSSMFGFVYSPAWV 713

Query: 680 ------DALDFELSYYDIQIDNVISTMSTQDVLNQERDGFDMSNVLFRDPVT----GKID 729
                 ++ D + +YY  ++ + I     Q  ++Q       S   + D +T    G I 
Sbjct: 714 NNIDWMNSFDIKGTYYSHEVRDAIEPEDAQFKIDQCVANPTSS---YCDDITRTAGGTIS 770

Query: 730 YVVLQKMNLGELKTSGIDFNIRYLL-ETSVGEFRFGAETNYVLSWESKDGPYSELEDIIG 788
            +  + +N+G + TSG D    Y   +   G         +V  +  +DG      +++G
Sbjct: 771 SIDNRLVNIGTIDTSGYDITFSYASPQYDWGRLSVNWSNTFVNEY-VEDG-----RELVG 824

Query: 789 ----DVGQPQFRANLSTTWTQGEWEASLFARYTDS------------------------- 819
               + G P+++++++  W   +W  +   R+ DS                         
Sbjct: 825 KEQNNTGIPEWKSSMNIGWALEDWAVNWTVRHVDSLTESCSDFLDGTPDSLTALGLCSNP 884

Query: 820 ---QEDEDYGKTPSQWLLDAQAGYNLP----WNAKVNVGIRNLLDEEPAMNENLGFPGYD 872
               E     K  +    D Q  Y  P     + ++  GI N  +  P    +    GYD
Sbjct: 885 NTADESLSTNKLDATTYSDIQVSY-FPEVDGVDMELTFGINNAFNANPPACYSCSLNGYD 943

Query: 873 TYLYDPIGREYYVRYNQKF 891
             +YDP G   Y+    KF
Sbjct: 944 PSVYDPEGSFSYLSVKMKF 962