Pairwise Alignments

Query, 891 a.a., hypothetical TonB-dependent receptor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 893 a.a., Outer membrane receptor proteins, mostly Fe transport from Kangiella aquimarina DSM 16071

 Score =  379 bits (973), Expect = e-109
 Identities = 291/969 (30%), Positives = 449/969 (46%), Gaps = 154/969 (15%)

Query: 1   MTTQTTVARAVRFSLLALVSTSIAPIAMAAEQGAVDANKVERIAVTGSRIQRTDMETSSP 60
           MT +T +A+AV+++L +  + S+A  A A+     +A + E + VTGSR++RTD+E + P
Sbjct: 1   MTNKTMIAKAVKYALYSGFAASMAVAAPASFAAEEEAEEAETVVVTGSRLKRTDVEGALP 60

Query: 61  VTVISRAEIDASGTATVSDFVRNLSQNSFGSFREASGFGSGQSSQSTVSMRGLGSQRTLV 120
           VTVISR ++D SG  +V+DF+RN + NSFGSFR  SG  S   S + +S+RGLG  R+L+
Sbjct: 61  VTVISREDLDMSGDVSVADFLRNTTFNSFGSFRPQSG--SSAQSFAELSLRGLGGGRSLI 118

Query: 121 LIDGRRMGSSVAFGGGTQNLNVVPMAAIERIEVLRDGASAVYGSDAVAGVINIITKKEFE 180
           LIDGRR G      G  Q+LN +P+AA+ERIE+L DGASA+YG+DA+ GV+NIIT+K+F+
Sbjct: 119 LIDGRR-GPVAPQVGSAQDLNSIPLAAVERIEILSDGASAIYGTDAIGGVVNIITRKDFD 177

Query: 181 GVEFDADLGATQHGGAEKSNARFTFGVNSEKTNMVASVEYYNRAALYDADRDYSDTLYSA 240
           GVEF          G         FG + ++ +      + +R  ++  DR++S    S+
Sbjct: 178 GVEFRIGASEPSREGGSTDEGSIIFGASGDRGSAYLGASWNSREIVFQRDREWSSGGISS 237

Query: 241 HGWPGTGSYVDKTKPILDADGKPTGKYQTVSFADKRCGEGNSLV---TGPDGNQTCSYNA 297
           +G              L      TG     ++     GEG   V   T P G   C Y+ 
Sbjct: 238 YG---------NNYQSLATTTAFTGLSGVQNWTPN--GEGCDSVGMFTIP-GQNLCFYDF 285

Query: 298 AAESATMAAQERFSTFVKVDHELTEDINWTNRLMMSRVWTEGQYAAAPNSYSPKLRWTKE 357
            A +A  A  E  S F +  +++ +D +       SRV + G+YA  P            
Sbjct: 286 TALAADEAELENHSIFGRAQYQINDDWSTFFNATNSRVKSFGRYAPTP------------ 333

Query: 358 NSDIYLATVNKYGNDYLKNQLKYDAKGNLIGGDTINLKMRTTPLGPRVTNVEDTDINFLT 417
              + +       N+Y+              G+ + L+ R+   G R TN   TD N + 
Sbjct: 334 ---LIVFVPASSPNNYV--------------GEDVLLRHRSLGTGTRDTN---TDQN-MY 372

Query: 418 ALEGHSDILGGTAWNLGAQWIRSDVTTIQTGLANANMIQEFLDNGKLDYFAAGTGYVEGS 477
           A+E          W  G +   +D   ++ G+   +   +      +          +GS
Sbjct: 373 AVE----------W--GFEGFVTDAVEMEFGIRRNDYKYDEFGRNYVVTPLMNQAIADGS 420

Query: 478 NELQLQEAAHTGIFTGRVQTYGIDG---------GASFDLFELPAGTVPLAIGFEFMRTE 528
            ++         +  G   T   +           + FDLF++  G   + +G E+ + +
Sbjct: 421 YDILDPAGNPDSVLNGLKATINRESSSIIDEVYVNSQFDLFDMDGGAARMLVGGEYRKEK 480

Query: 529 YDKTNDAGSNLGNIIGTSGGDNIQGKSREVLSFSAETMFPIIDGLDLELSARFDDYSDFG 588
           Y+   D+ S  G +IG S G N  G  R+V +   ET+ P++D L++ ++ R+DDYSDFG
Sbjct: 481 YEDQYDSLSE-GGVIGGSAG-NSAGGGRDVTAVYFETLLPVLDNLEVNVAGRYDDYSDFG 538

Query: 589 STFNPKVGLSYRPVDSLLVRASYGTGFRAPTFDDLYA---------TASETYLWARDWTQ 639
             F PKV + ++P D + +RAS+G GFRAP+ D L A         T  ET L+      
Sbjct: 539 DNFAPKVSVRFQPTDDVTMRASWGEGFRAPSLDILTAQPAFSADGTTDPETCLFLSGSIS 598

Query: 640 CPGNPNGCVQEQFKAQYQGNDDLEPEESTSLSLGLVWNVTDALDFELSYYDIQIDNVIST 699
           C        Q Q  A    N +L  E S     G+VW  TD L   + YY+IQ+++ IS 
Sbjct: 599 C--------QTQTDAYVLANPNLGAENSDQFGFGVVWQATDDLSMSVDYYNIQLEDQISA 650

Query: 700 MSTQDVLNQERDGFDMSNVLFRDPVT------------------------GKID------ 729
           + T +++   R      N +   P T                        G I+      
Sbjct: 651 IGTGEIVACLRGLAPCPNGVSELPATATPGDASLGLGAAFQTVPYDVDGNGTIEPGEEIN 710

Query: 730 ---YVVLQKMNLGELKTSGIDFNIRYLLET-SVGEFRFGAETNYVLSWESKDGPYSELED 785
              +V    +N GE++TSG+DFN+++  +    G      +  YV  +E         ED
Sbjct: 711 PILFVQRGFINRGEIETSGLDFNVKHRYDMGGAGVLSTNLQVGYVEKYELNG------ED 764

Query: 786 IIGDVGQPQFRANLSTTWTQGE----WEASLFA--RYTDSQEDEDYG------------- 826
            +G  G P  RANLS  W+ G+    W  +  A  + T+    ED+              
Sbjct: 765 FVGLPGVPDMRANLSNVWSIGDFGVVWNINHIAETKSTNGTFCEDFSDPSCIPDVSYDTT 824

Query: 827 ---KTPSQWLLDAQAGYNLPWNAKVNVGIRNLLDEEPAMNE-NLGFPGYDTYLYDPIGRE 882
              + PS    D Q  YN PW+  +++G  N+ DE+P ++    G  GYD  LYD  GR 
Sbjct: 825 VRLQNPSWTTHDLQVNYNTPWDGMISLGANNITDEDPVLDPYEGGGRGYDFGLYDGYGRI 884

Query: 883 YYVRYNQKF 891
            Y+RY Q+F
Sbjct: 885 VYLRYTQRF 893