Pairwise Alignments

Query, 217 a.a., channel protein, hemolysin III family subfamily (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 205 a.a., hemolysin III from Pseudomonas simiae WCS417

 Score =  146 bits (368), Expect = 3e-40
 Identities = 77/194 (39%), Positives = 120/194 (61%), Gaps = 2/194 (1%)

Query: 20  NSISHGLGVIAGAVGLIFMLLKGVDHLSSIQLTGVIIYGASLILLFLSSTLYHSVTHRGW 79
           N+ SH LG +A  +G ++ML+      S  ++  V IYG +L++L+ +ST+YHSV  R  
Sbjct: 8   NAWSHLLGAVAACIGAVWMLVVASLDGSPWKIVSVAIYGFTLMVLYSASTVYHSVRGRR- 66

Query: 80  KHKLKIVDHCAIYCLIAGTYTPLMLISLQGNLSTIILTAIWSLAIGGILFKTLFIHRFKK 139
           K  ++ VDH +IY LIAG+YTP  L++L+G     +   +W LA+ GIL +       + 
Sbjct: 67  KEIMQKVDHFSIYLLIAGSYTPFCLVTLRGPWGWTLFGIVWGLAVIGILQEIKPRSEARI 126

Query: 140 LSLVLYLAMGWLCMTVIGDLTAAMSPLGFNLLLLGGLFYTLGVIFY-VGKRIPYNHAIWH 198
           LS+V+Y  MGW+ +  +  L AA+   GF  L  GG+ YT+G+IF+ +  R+ ++H IWH
Sbjct: 127 LSIVIYAVMGWIVLVAVKPLLAALGTAGFIWLASGGVLYTVGIIFFALEDRLRHSHGIWH 186

Query: 199 LFVLAGAMSHFFCI 212
           LFV+ G++ HF  I
Sbjct: 187 LFVIGGSLLHFVAI 200