Pairwise Alignments

Query, 217 a.a., channel protein, hemolysin III family subfamily (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 205 a.a., Channel protein, hemolysin III family from Pseudomonas putida KT2440

 Score =  139 bits (349), Expect = 5e-38
 Identities = 73/198 (36%), Positives = 116/198 (58%), Gaps = 2/198 (1%)

Query: 20  NSISHGLGVIAGAVGLIFMLLKGVDHLSSIQLTGVIIYGASLILLFLSSTLYHSVTHRGW 79
           N+ +H +G +  A+G I++++         ++    IYG +L+LL+  STLYHS   R  
Sbjct: 8   NAWTHLVGAVLAAIGAIWLIVAAGLQGDPWKIVSFSIYGGTLLLLYSISTLYHSTRGRA- 66

Query: 80  KHKLKIVDHCAIYCLIAGTYTPLMLISLQGNLSTIILTAIWSLAIGGILFKTLFIHRFKK 139
           K  ++ +DH +IY LIAG+YTP  L+SL+G     +   +W LAI G+L +       + 
Sbjct: 67  KVIMRKLDHLSIYLLIAGSYTPFCLVSLRGPWGWSLFGVVWGLAIIGMLQEIKPRSEARI 126

Query: 140 LSLVLYLAMGWLCMTVIGDLTAAMSPLGFNLLLLGGLFYTLGVIFYV-GKRIPYNHAIWH 198
           LS+++Y  MGW+ +  +  L  ++   GF  L  GG+FYT+G+IF+    R  + H IWH
Sbjct: 127 LSIIIYAVMGWIVLVAVKPLLNSLGTAGFAWLAAGGVFYTVGIIFFAFDSRFRHWHGIWH 186

Query: 199 LFVLAGAMSHFFCIYLTV 216
           LFV+AG++ HF  + L V
Sbjct: 187 LFVIAGSLMHFVAVSLYV 204