Pairwise Alignments

Query, 217 a.a., channel protein, hemolysin III family subfamily (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 219 a.a., COG1272: Predicted membrane protein hemolysin III homolog from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  234 bits (597), Expect = 9e-67
 Identities = 118/214 (55%), Positives = 151/214 (70%), Gaps = 1/214 (0%)

Query: 4   EKPLNISAYSLSEEIANSISHGLGVIAGAVGLIFMLLKGVD-HLSSIQLTGVIIYGASLI 62
           +KPL    YSL+EEIANSISHG+G++ G VGL+ +L++ V+ +     +    +YG S+I
Sbjct: 3   QKPLMTQGYSLAEEIANSISHGIGLVFGIVGLVLLLVQAVEANAGMTAIASYSLYGGSMI 62

Query: 63  LLFLSSTLYHSVTHRGWKHKLKIVDHCAIYCLIAGTYTPLMLISLQGNLSTIILTAIWSL 122
           LLFL+STLYH++ H+  K  LK  DHCAIY LIAGTYTP +L+ L   L+  ++  IWSL
Sbjct: 63  LLFLASTLYHAIPHQRAKIWLKKFDHCAIYLLIAGTYTPFLLVGLDSPLARGLMIVIWSL 122

Query: 123 AIGGILFKTLFIHRFKKLSLVLYLAMGWLCMTVIGDLTAAMSPLGFNLLLLGGLFYTLGV 182
           A+ GILFK    HRFK LSLV YLAMGWL + V+  L   ++  G  LL +GG+ Y+LGV
Sbjct: 123 ALFGILFKLTIAHRFKVLSLVTYLAMGWLSLIVVYQLAIKLAIGGVTLLAVGGVVYSLGV 182

Query: 183 IFYVGKRIPYNHAIWHLFVLAGAMSHFFCIYLTV 216
           IFYV KRIPYNHAIWH FVL G++ HF  IYL V
Sbjct: 183 IFYVCKRIPYNHAIWHGFVLGGSVCHFLAIYLYV 216