Pairwise Alignments

Query, 217 a.a., channel protein, hemolysin III family subfamily (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 222 a.a., Hemolysin III from Agrobacterium fabrum C58

 Score =  138 bits (348), Expect = 7e-38
 Identities = 71/201 (35%), Positives = 117/201 (58%)

Query: 12  YSLSEEIANSISHGLGVIAGAVGLIFMLLKGVDHLSSIQLTGVIIYGASLILLFLSSTLY 71
           Y   E +A+ I HG+G++   +G   ++   +   S   +    IYG  L+     S  Y
Sbjct: 11  YDFYEIVADGIVHGVGIVFALIGATALIFYAMAWGSLSAIAAAWIYGLGLVACLSVSFTY 70

Query: 72  HSVTHRGWKHKLKIVDHCAIYCLIAGTYTPLMLISLQGNLSTIILTAIWSLAIGGILFKT 131
           +   H   K  L+ +DH AI+ LIA TYTP ++  +   L  ++L  IW  AI GIL K 
Sbjct: 71  NIWPHSRVKWFLRRLDHSAIFILIAATYTPFLMRGIHDPLIAVMLGLIWLAAICGILLKC 130

Query: 132 LFIHRFKKLSLVLYLAMGWLCMTVIGDLTAAMSPLGFNLLLLGGLFYTLGVIFYVGKRIP 191
           LF  R+ ++++ LYLAMGW  + V+  L++ ++P+   L++ GG+ Y+LGVIF+V +++ 
Sbjct: 131 LFPGRYDRVAIGLYLAMGWSGIMVVEPLSSHLAPVTLWLIVAGGVIYSLGVIFHVWEKLR 190

Query: 192 YNHAIWHLFVLAGAMSHFFCI 212
           + +AIWH FV++ A  H+F +
Sbjct: 191 FQNAIWHGFVVSAAAVHYFAV 211