Pairwise Alignments

Query, 721 a.a., thiamin biosynthesis protein ThiC (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 630 a.a., thiamine biosynthesis protein ThiC from Pseudomonas simiae WCS417

 Score =  873 bits (2255), Expect = 0.0
 Identities = 435/586 (74%), Positives = 487/586 (83%), Gaps = 14/586 (2%)

Query: 43  SQKLYLQGSRADLRVGMRQILQ--TDTRIGGRAAAPNVEKNPPIPVYDCAGPYSDPAAQI 100
           SQK+Y+QG+R D+RV MR+I    T T  GG       E N P+ VYD +GPY+DP   I
Sbjct: 29  SQKIYVQGTRPDIRVPMREISLDVTPTDFGG-------EINAPVTVYDTSGPYTDPNVII 81

Query: 101 NVRQGLAKLRLPWIIERQDTEVLDCTTSDFTQQRLKDDGLDHLRFEAGSSAIIRPRRALP 160
           +VR+GLA +R PWI  R DTE L   +S F QQRL D  L  LRF    + +  PRRA  
Sbjct: 82  DVRKGLADVRSPWIEVRNDTERLPGLSSHFGQQRLSDAELTALRF----AHVKNPRRAKA 137

Query: 161 GKRVSQLHYARQGIITPEMEYVAIRENMALADVQDE-ILNRRGQGESFGAVIGKPITPEF 219
           G  V+Q+HYAR+GIIT EMEYVAIRENM L + +   +L+++  G SFGA + K ITPEF
Sbjct: 138 GANVTQMHYARKGIITAEMEYVAIRENMKLEEARATGLLDQQHAGHSFGASVPKIITPEF 197

Query: 220 VRDEIARGRAIIPLNINHPEAEPMTIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWSTRW 279
           VR+EIARGRAIIP NINH E EPM IGRNFLVK+N NIGNSA+ SSIEEEV KL W  RW
Sbjct: 198 VREEIARGRAIIPANINHTELEPMIIGRNFLVKINGNIGNSALGSSIEEEVAKLTWGIRW 257

Query: 280 GADTVMDLSTGRYIHETREWIIRNSPVPIGTVPIYQALEKVNGVAEHLTWEVFRDTLIEQ 339
           G+DTVMDLSTG++IHETREWIIRNSPVPIGTVPIYQALEKV G AE LTWE+FRDTLIEQ
Sbjct: 258 GSDTVMDLSTGKHIHETREWIIRNSPVPIGTVPIYQALEKVGGAAEDLTWELFRDTLIEQ 317

Query: 340 AEQGVDYFTIHAGVLLRYVPMTAKRVTGIVSRGGSIMAKWCLSHHQENFLYTHFREICEL 399
           AEQGVDYFTIHAGVLLRYVP+TAKRVTGIVSRGGSIMAKWCL+HH+ENF YTHF EICE+
Sbjct: 318 AEQGVDYFTIHAGVLLRYVPLTAKRVTGIVSRGGSIMAKWCLAHHKENFTYTHFDEICEI 377

Query: 400 CVAYDVSLSLGDGMRPGSIADANDEAQFAELETLGELVNIAWEYDVQTIIEGPGHIPMQL 459
             AYDVS SLGDG+RPGSIADAND AQF ELETLGEL   AW++DVQT+IEGPGH+PMQL
Sbjct: 378 MKAYDVSFSLGDGLRPGSIADANDAAQFGELETLGELTKTAWKHDVQTMIEGPGHVPMQL 437

Query: 460 IKENMDKQLIHCAEAPFYTLGPQITDIAPGYDHFTSGIGAAMIAWYGCAMLCYVTPKEHL 519
           IKENMDKQL  C EAPFYTLGP  TDIAPGYDH TSGIGAAMI W+GCAMLCYVTPKEHL
Sbjct: 438 IKENMDKQLECCDEAPFYTLGPLTTDIAPGYDHITSGIGAAMIGWFGCAMLCYVTPKEHL 497

Query: 520 GLPNKQDVKQGLIAYKIAAHAADIAKGHPGAQIRDNALSKARFEFRWEDQYNLGLDPDTA 579
           GLPNK DVK G+I YKIAAHAAD+AKGHPGAQIRDNALSKARFEFRWEDQ+NLGLDPDTA
Sbjct: 498 GLPNKDDVKTGIITYKIAAHAADLAKGHPGAQIRDNALSKARFEFRWEDQFNLGLDPDTA 557

Query: 580 RAYHDESLPQESAKVAHFCSMCGPKFCSMKITQDVRDYAASLEADA 625
           R+YHDE+LP++SAKVAHFCSMCGPKFCSMKITQ+VR+YAA+   +A
Sbjct: 558 RSYHDETLPKDSAKVAHFCSMCGPKFCSMKITQEVREYAANQRIEA 603